(Circular) (Six-base) MAPSORT of: pF1KSDA0289.seq Check: 1251 from: 1 to: 7021 pF1KSDA0289 7021 bp With 182 enzymes: SgfI * June 20, 2008 10:33 .. AccI GT'mk_AC Cuts at: 649 4057 649 Size: 3408 3613 Acc65I G'GTAC_C Cuts at: 2531 2738 4035 2531 Size: 207 1297 5517 Fragments arranged by size: 5517 1297 207 AclI AA'CG_TT Cuts at: 6861 6861 Size: 7021 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 557 1181 2499 3817 4844 5276 6025 6293 557 Size: 624 1318 1318 1027 432 749 268 1285 Fragments arranged by size: 1318 1318 1285 1027 749 624 432 268 AflIII A'CryG_T Cuts at: 3485 3949 4371 5477 6454 3485 Size: 464 422 1106 977 4052 Fragments arranged by size: 4052 1106 977 464 422 AgeI A'CCGG_T Cuts at: 5409 5409 Size: 7021 AleI CACnn'nnGTG Cuts at: 1547 3238 1547 Size: 1691 5330 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1403 1771 1403 Size: 368 6653 AlwNI CAG_nnn'CTG Cuts at: 462 1442 2358 2409 3109 3966 4324 5893 462 Size: 980 916 51 700 857 358 1569 1590 Fragments arranged by size: 1590 1569 980 916 857 700 358 51 ApaLI G'TGCA_C Cuts at: 5791 5791 Size: 7021 ApoI r'AATT_y Cuts at: 1965 3736 4023 6374 6630 1965 Size: 1771 287 2351 256 2356 Fragments arranged by size: 2356 2351 1771 287 256 AseI AT'TA_AT Cuts at: 20 20 Size: 7021 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 7021 AvaI C'yCGr_G Cuts at: 348 4039 348 Size: 3691 3330 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 3856 3889 3856 Size: 33 6988 BamHI G'GATC_C Cuts at: 207 575 1215 1596 4044 207 Size: 368 640 381 2448 3184 Fragments arranged by size: 3184 2448 640 381 368 BanI G'GyrC_C Cuts at: 505 811 2130 2531 2738 2887 3420 3881 4035 Size: 306 1319 401 207 149 533 461 154 Cuts at: 4035 4449 4697 4732 505 Size: 414 248 35 2794 Fragments arranged by size: 2794 1319 533 461 414 401 306 248 207 154 149 35 BanII G_rGCy'C Cuts at: 143 317 2477 3091 3227 3929 4033 5063 143 Size: 174 2160 614 136 702 104 1030 2101 Fragments arranged by size: 2160 2101 1030 702 614 174 136 104 BbeI G_GCGC'C Cuts at: 2134 4453 4701 2134 Size: 2319 248 4454 Fragments arranged by size: 4454 2319 248 BbsI GAAGACnn'nnnn_ Cuts at: 2789 3556 3952 2789 Size: 767 396 5858 Fragments arranged by size: 5858 767 396 BbvCI CC'TCA_GC Cuts at: 571 710 1762 2611 3808 571 Size: 139 1052 849 1197 3784 Fragments arranged by size: 3784 1197 1052 849 139 BciVI GTATCCnnnnn_n' Cuts at: 3982 4917 5680 7021 3982 Size: 935 763 1341 3982 Fragments arranged by size: 3982 1341 935 763 BclI T'GATC_A Cuts at: 1289 3452 4539 1289 Size: 2163 1087 3771 Fragments arranged by size: 3771 2163 1087 BglI GCCn_nnn'nGGC Cuts at: 1795 1795 Size: 7021 BglII A'GATC_T Cuts at: 410 2465 3602 4004 4534 6573 410 Size: 2055 1137 402 530 2039 858 Fragments arranged by size: 2055 2039 1137 858 530 402 BlpI GC'TnA_GC Cuts at: 2993 3361 3928 4131 2993 Size: 368 567 203 5883 Fragments arranged by size: 5883 567 368 203 Bme1580I G_kGCm'C Cuts at: 510 761 1518 2017 2441 4644 4737 5795 510 Size: 251 757 499 424 2203 93 1058 1736 Fragments arranged by size: 2203 1736 1058 757 499 424 251 93 BmgBI CAC'GTC Cuts at: 204 1335 3540 3950 204 Size: 1131 2205 410 3275 Fragments arranged by size: 3275 2205 1131 410 BmrI ACTGGGnnnn_n' Cuts at: 1571 2510 3927 4231 4312 4647 6793 1571 Size: 939 1417 304 81 335 2146 1799 Fragments arranged by size: 2146 1799 1417 939 335 304 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1722 2484 5386 1722 Size: 762 2902 3357 Fragments arranged by size: 3357 2902 762 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 244 397 427 468 484 789 1083 1435 1470 Size: 153 30 41 16 305 294 352 35 Cuts at: 1470 1918 2104 2464 2794 2927 3028 3131 3268 Size: 448 186 360 330 133 101 103 137 Cuts at: 3268 3407 3510 244 Size: 139 103 3755 Fragments arranged by size: 3755 448 360 352 330 305 294 186 153 139 137 133 103 103 101 41 35 30 16 Bpu10I CC'TnA_GC Cuts at: 283 571 710 817 1376 1762 2611 3102 3808 Size: 288 139 107 559 386 849 491 706 Cuts at: 3808 283 Size: 3496 Fragments arranged by size: 3496 849 706 559 491 386 288 139 107 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3569 3853 4195 5074 5568 5866 3569 Size: 284 342 879 494 298 4724 Fragments arranged by size: 4724 879 494 342 298 284 BsaI GGTCTCn'nnnn_ Cuts at: 2230 2828 3787 6725 2230 Size: 598 959 2938 2526 Fragments arranged by size: 2938 2526 959 598 BsaAI yAC'GTr Cuts at: 4011 4372 4011 Size: 361 6660 BsaBI GATnn'nnATC Cuts at: 6 1294 4533 6572 6 Size: 1288 3239 2039 455 Fragments arranged by size: 3239 2039 1288 455 BsaHI Gr'CG_yC Cuts at: 2131 4450 4698 5402 6898 2131 Size: 2319 248 704 1496 2254 Fragments arranged by size: 2319 2254 1496 704 248 BsaWI w'CCGG_w Cuts at: 2558 4208 4729 5409 5683 5830 6241 2558 Size: 1650 521 680 274 147 411 3338 Fragments arranged by size: 3338 1650 680 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 211 241 344 374 1224 1254 1735 1765 211 Size: 30 103 30 850 30 481 30 5467 Fragments arranged by size: 5467 850 481 103 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 313 580 1317 1879 2476 2734 2836 3289 3970 Size: 267 737 562 597 258 102 453 681 Cuts at: 3970 313 Size: 3364 Fragments arranged by size: 3364 737 681 597 562 453 267 258 102 BseYI C'CCAG_C Cuts at: 164 1196 3226 3794 4444 5202 5781 6277 164 Size: 1032 2030 568 650 758 579 496 908 Fragments arranged by size: 2030 1032 908 758 650 579 568 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 811 2672 3301 811 Size: 1861 629 4531 Fragments arranged by size: 4531 1861 629 BsiEI CG_ry'CG Cuts at: 104 194 4561 4607 5817 104 Size: 90 4367 46 1210 1308 Fragments arranged by size: 4367 1308 1210 90 46 BsiHKAI G_wGCw'C Cuts at: 1327 1382 3091 3103 3929 4033 4811 5001 5795 Size: 55 1709 12 826 104 778 190 794 Cuts at: 5795 1327 Size: 2553 Fragments arranged by size: 2553 1709 826 794 778 190 104 55 12 BsmI GAATG_Cn' Cuts at: 1573 1619 1573 Size: 46 6975 Bsp1286I G_dGCh'C Cuts at: 143 317 510 761 1327 1382 1518 2017 2441 Size: 174 193 251 566 55 136 499 424 Cuts at: 2441 2477 3091 3103 3227 3929 4033 4644 4737 Size: 36 614 12 124 702 104 611 93 Cuts at: 4737 4811 5001 5063 5795 143 Size: 74 190 62 732 1369 Fragments arranged by size: 1369 732 702 614 611 566 499 424 251 193 190 174 136 124 104 93 74 62 55 36 12 BspEI T'CCGG_A Cuts at: 6241 6241 Size: 7021 BspHI T'CATG_A Cuts at: 6197 6197 Size: 7021 BspMI ACCTGCnnnn'nnnn_ Cuts at: 2742 4069 4283 4585 4966 2742 Size: 1327 214 302 381 4797 Fragments arranged by size: 4797 1327 381 302 214 BsrBI CCG'CTC Cuts at: 50 2826 5311 5365 6851 7016 50 Size: 2776 2485 54 1486 165 55 Fragments arranged by size: 2776 2485 1486 165 55 54 BsrDI GCAATG_nn' Cuts at: 786 966 2622 3413 3828 4931 786 Size: 180 1656 791 415 1103 2876 Fragments arranged by size: 2876 1656 1103 791 415 180 BsrFI r'CCGG_y Cuts at: 171 196 656 1923 2997 5017 5198 5409 171 Size: 25 460 1267 1074 2020 181 211 1783 Fragments arranged by size: 2020 1783 1267 1074 460 211 181 25 BssSI C'ACGA_G Cuts at: 1318 2390 2648 3220 5290 5650 1318 Size: 1072 258 572 2070 360 2689 Fragments arranged by size: 2689 2070 1072 572 360 258 BstAPI GCAn_nnn'nTGC Cuts at: 2921 3818 4396 2921 Size: 897 578 5546 Fragments arranged by size: 5546 897 578 BstBI TT'CG_AA Cuts at: 110 110 Size: 7021 BstEII G'GTnAC_C Cuts at: 3012 3012 Size: 7021 BstXI CCAn_nnnn'nTGG Cuts at: 222 2340 2898 222 Size: 2118 558 4345 Fragments arranged by size: 4345 2118 558 BstYI r'GATC_y Cuts at: 1 207 410 575 1215 1596 2465 3602 3669 Size: 206 203 165 640 381 869 1137 67 Cuts at: 3669 4004 4044 4511 4534 4869 5115 6129 6215 Size: 335 40 467 23 335 246 1014 86 Cuts at: 6215 6227 6573 1 Size: 12 346 449 Fragments arranged by size: 1137 1014 869 640 467 449 381 346 335 335 246 206 203 165 86 67 40 23 12 BstZ17I GTA'TAC Cuts at: 650 650 Size: 7021 Bsu36I CC'TnA_GG Cuts at: 2840 3940 2840 Size: 1100 5921 BtgI C'CryG_G Cuts at: 125 188 1502 1651 3212 3563 125 Size: 63 1314 149 1561 351 3583 Fragments arranged by size: 3583 1561 1314 351 149 63 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 3762 4969 5150 5313 3762 Size: 1207 181 163 5470 Fragments arranged by size: 5470 1207 181 163 BtsI GCAGTG_nn' Cuts at: 256 463 3146 4262 256 Size: 207 2683 1116 3015 Fragments arranged by size: 3015 2683 1116 207 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 789 824 3135 3170 789 Size: 35 2311 35 4640 Fragments arranged by size: 4640 2311 35 35 DraI TTT'AAA Cuts at: 4018 4018 Size: 7021 DraIII CAC_nnn'GTG Cuts at: 3497 3497 Size: 7021 DrdI GACnn_nn'nnGTC Cuts at: 4725 5585 4725 Size: 860 6161 EaeI y'GGCC_r Cuts at: 185 191 1796 2429 2594 4604 4778 5169 5196 Size: 6 1605 633 165 2010 174 391 27 Cuts at: 5196 6543 185 Size: 1347 663 Fragments arranged by size: 2010 1605 1347 663 633 391 174 165 27 6 EagI C'GGCC_G Cuts at: 191 4604 191 Size: 4413 2608 EarI CTCTTCn'nnn_ Cuts at: 331 557 691 1474 3619 5042 5252 331 Size: 226 134 783 2145 1423 210 2100 Fragments arranged by size: 2145 2100 1423 783 226 210 134 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1134 3937 5227 5539 5685 6831 1134 Size: 2803 1290 312 146 1146 1324 Fragments arranged by size: 2803 1324 1290 1146 312 146 EcoICRI GAG'CTC Cuts at: 3089 3927 4031 3089 Size: 838 104 6079 Fragments arranged by size: 6079 838 104 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 244 397 427 468 484 557 789 1083 1181 Size: 153 30 41 16 73 232 294 98 Cuts at: 1181 1435 1470 1918 2104 2464 2499 2794 2927 Size: 254 35 448 186 360 35 295 133 Cuts at: 2927 3028 3131 3268 3407 3510 3817 4844 5276 Size: 101 103 137 139 103 307 1027 432 Cuts at: 5276 6025 6293 244 Size: 749 268 972 Fragments arranged by size: 1027 972 749 448 432 360 307 295 294 268 254 232 186 153 139 137 133 103 103 101 98 73 41 35 35 30 16 EcoO109I rG'GnC_Cy Cuts at: 681 2607 3696 3766 3804 3936 4158 681 Size: 1926 1089 70 38 132 222 3544 Fragments arranged by size: 3544 1926 1089 222 132 70 38 EcoRI G'AATT_C Cuts at: 3736 4023 3736 Size: 287 6734 EcoRV GAT'ATC Cuts at: 432 432 Size: 7021 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 342 1099 1296 3867 5038 342 Size: 757 197 2571 1171 2325 Fragments arranged by size: 2571 2325 1171 757 197 FspI TGC'GCA Cuts at: 337 778 4800 337 Size: 441 4022 2558 Fragments arranged by size: 4022 2558 441 HaeII r_GCGC'y Cuts at: 663 2134 2668 3525 4453 4701 5725 6704 663 Size: 1471 534 857 928 248 1024 979 980 Fragments arranged by size: 1471 1024 980 979 928 857 534 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 344 376 2200 2232 3104 3136 3367 3399 3594 Size: 32 1824 32 872 32 231 32 195 Cuts at: 3594 3626 4861 4891 4893 4923 344 Size: 32 1235 30 2 30 2442 Fragments arranged by size: 2442 1824 1235 872 231 195 32 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 1338 4058 1338 Size: 2720 4301 HindIII A'AGCT_T Cuts at: 2197 3849 2197 Size: 1652 5369 KasI G'GCGC_C Cuts at: 2130 4449 4697 2130 Size: 2319 248 4454 Fragments arranged by size: 4454 2319 248 KpnI G_GTAC'C Cuts at: 2535 2742 4039 2535 Size: 207 1297 5517 Fragments arranged by size: 5517 1297 207 MluI A'CGCG_T Cuts at: 6454 6454 Size: 7021 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1088 2108 2651 5692 5876 1088 Size: 1020 543 3041 184 2233 Fragments arranged by size: 3041 2233 1020 543 184 MscI TGG'CCA Cuts at: 187 1798 2431 2596 4780 187 Size: 1611 633 165 2184 2428 Fragments arranged by size: 2428 2184 1611 633 165 MslI CAynn'nnrTG Cuts at: 247 500 1547 1834 2071 2167 3238 3484 5008 Size: 253 1047 287 237 96 1071 246 1524 Cuts at: 5008 5135 247 Size: 127 2133 Fragments arranged by size: 2133 1524 1071 1047 287 253 246 237 127 96 MspA1I CmG'CkG Cuts at: 1200 1304 1428 1490 1973 2112 2760 4130 4444 Size: 104 124 62 483 139 648 1370 314 Cuts at: 4444 4804 5819 6064 1200 Size: 360 1015 245 2157 Fragments arranged by size: 2157 1370 1015 648 483 360 314 245 139 124 104 62 NaeI GCC'GGC Cuts at: 173 198 658 5200 173 Size: 25 460 4542 1994 Fragments arranged by size: 4542 1994 460 25 NarI GG'CG_CC Cuts at: 2131 4450 4698 2131 Size: 2319 248 4454 Fragments arranged by size: 4454 2319 248 NcoI C'CATG_G Cuts at: 125 1502 1651 125 Size: 1377 149 5495 Fragments arranged by size: 5495 1377 149 NgoMIV G'CCGG_C Cuts at: 171 196 656 5198 171 Size: 25 460 4542 1994 Fragments arranged by size: 4542 1994 460 25 NruI TCG'CGA Cuts at: 5382 5382 Size: 7021 NspI r_CATG'y Cuts at: 1372 1752 3489 4072 4572 5481 1372 Size: 380 1737 583 500 909 2912 Fragments arranged by size: 2912 1737 909 583 500 380 PasI CC'CwG_GG Cuts at: 1496 1496 Size: 7021 PciI A'CATG_T Cuts at: 3485 5477 3485 Size: 1992 5029 PflMI CCAn_nnn'nTGG Cuts at: 1442 2127 2631 1442 Size: 685 504 5832 Fragments arranged by size: 5832 685 504 PfoI T'CCnGG_A Cuts at: 519 824 839 1526 2138 2696 3245 3665 519 Size: 305 15 687 612 558 549 420 3875 Fragments arranged by size: 3875 687 612 558 549 420 305 15 PmeI GTTT'AAAC Cuts at: 4018 4018 Size: 7021 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 6160 6192 6160 Size: 32 6989 PpuMI rG'GwC_Cy Cuts at: 681 3696 3766 3804 3936 681 Size: 3015 70 38 132 3766 Fragments arranged by size: 3766 3015 132 70 38 PshAI GACnn'nnGTC Cuts at: 3131 3131 Size: 7021 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 1233 1265 1233 Size: 32 6989 PstI C_TGCA'G Cuts at: 887 953 1939 1960 2546 4066 4751 887 Size: 66 986 21 586 1520 685 3157 Fragments arranged by size: 3157 1520 986 685 586 66 21 PvuI CG_AT'CG Cuts at: 104 104 Size: 7021 PvuII CAG'CTG Cuts at: 1200 1304 1428 2112 4444 4804 1200 Size: 104 124 684 2332 360 3417 Fragments arranged by size: 3417 2332 684 360 124 104 RsrII CG'GwC_CG Cuts at: 5214 5214 Size: 7021 SacI G_AGCT'C Cuts at: 3091 3929 4033 3091 Size: 838 104 6079 Fragments arranged by size: 6079 838 104 SalI G'TCGA_C Cuts at: 4056 4056 Size: 7021 SanDI GG'GwC_CC Cuts at: 681 681 Size: 7021 SapI GCTCTTCn'nnn_ Cuts at: 5042 5252 5042 Size: 210 6811 SbfI CC_TGCA'GG Cuts at: 953 4066 953 Size: 3113 3908 ScaI AGT'ACT Cuts at: 6538 6538 Size: 7021 SexAI A'CCwGG_T Cuts at: 1685 1685 Size: 7021 SfcI C'TryA_G Cuts at: 33 883 949 1935 1956 2542 3888 4062 4747 Size: 850 66 986 21 586 1346 174 685 Cuts at: 4747 5742 5933 33 Size: 995 191 1121 Fragments arranged by size: 1346 1121 995 986 850 685 586 191 174 66 21 SfoI GGC'GCC Cuts at: 2132 4451 4699 2132 Size: 2319 248 4454 Fragments arranged by size: 4454 2319 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 7021 SgrAI Cr'CCGG_yG Cuts at: 196 656 196 Size: 460 6561 SmaI CCC'GGG Cuts at: 350 4041 350 Size: 3691 3330 SmlI C'TyrA_G Cuts at: 3584 3868 4174 5089 5583 5845 3584 Size: 284 306 915 494 262 4760 Fragments arranged by size: 4760 915 494 306 284 262 SnaBI TAC'GTA Cuts at: 4011 4011 Size: 7021 SpeI A'CTAG_T Cuts at: 67 3039 3628 67 Size: 2972 589 3460 Fragments arranged by size: 3460 2972 589 SphI G_CATG'C Cuts at: 4072 4572 4072 Size: 500 6521 SspI AAT'ATT Cuts at: 1038 1667 1718 1038 Size: 629 51 6341 Fragments arranged by size: 6341 629 51 StyI C'CwwG_G Cuts at: 125 215 1502 1651 2333 4153 4507 125 Size: 90 1287 149 682 1820 354 2639 Fragments arranged by size: 2639 1820 1287 682 354 149 90 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 586 2168 4602 4735 5194 5405 586 Size: 1582 2434 133 459 211 2202 Fragments arranged by size: 2434 2202 1582 459 211 133 TatI w'GTAC_w Cuts at: 1602 6536 1602 Size: 4934 2087 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 211 243 248 280 1735 1767 3936 3968 6538 Size: 32 5 32 1455 32 2169 32 2570 Cuts at: 6538 6570 211 Size: 32 662 Fragments arranged by size: 2570 2169 1455 662 32 32 32 32 32 5 Tth111I GACn'n_nGTC Cuts at: 2027 4816 2027 Size: 2789 4232 XbaI T'CTAG_A Cuts at: 4050 4050 Size: 7021 XcmI CCAnnnn_n'nnnnTGG Cuts at: 630 805 1053 2296 2439 2632 4514 630 Size: 175 248 1243 143 193 1882 3137 Fragments arranged by size: 3137 1882 1243 248 193 175 143 XmaI C'CCGG_G Cuts at: 348 4039 348 Size: 3691 3330 Enzymes that do cut: AccI Acc65I AclI AcuI AflIII AgeI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbeI BbsI BbvCI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstEII BstXI BstYI BstZ17I Bsu36I BtgI BtgZI BtsI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NruI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsrI PstI PvuI PvuII RsrII SacI SalI SanDI SapI SbfI ScaI SexAI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI Enzymes that do not cut: AarI AatII AfeI AflII AhdI AloI ApaI AscI AvrII BcgI BfrBI BmtI BsiWI BsmBI BsrGI BssHII ClaI EcoNI FseI FspAI HpaI MfeI NdeI NheI NotI NsiI PacI PmlI PsiI PspOMI PspXI SacII SfiI SrfI StuI SwaI XhoI XmnI ZraI