FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0332, 1029 aa
  1>>>pF1KSDA0332 1029 - 1029 aa - 1029 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2200+/-0.00112; mu= 3.2635+/- 0.068
 mean_var=403.8099+/-81.631, 0's: 0 Z-trim(114.1): 64  B-trim: 122 in 1/54
 Lambda= 0.063824
 statistics sampled from 14635 (14688) to 14635 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.451), width:  16
 Scan time:  4.340

The best scores are:                                      opt bits E(32554)
CCDS46928.1 U2SURP gene_id:23350|Hs108|chr3        (1029) 6864 647.2 5.1e-185


>>CCDS46928.1 U2SURP gene_id:23350|Hs108|chr3             (1029 aa)
 initn: 6864 init1: 6864 opt: 6864  Z-score: 3435.1  bits: 647.2 E(32554): 5.1e-185
Smith-Waterman score: 6864; 100.0% identity (100.0% similar) in 1029 aa overlap (1-1029:1-1029)

               10        20        30        40        50        60
pF1KSD MADKTPGGSQKASSKTRSSDVHSSGSSDAHMDASGPSDSDMPSRTRPKSPRKHNYRNESA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MADKTPGGSQKASSKTRSSDVHSSGSSDAHMDASGPSDSDMPSRTRPKSPRKHNYRNESA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RESLCDSPHQNLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RESLCDSPHQNLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD QRRSMDAPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QRRSMDAPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD HPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD IPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD LQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD KLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD VLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDW
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD AIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPIDATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPIDATP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD IDDLDGVPIKSLDDDLDGVPLDATEDSKKNEPIFKVAPSKWEAVDESELEAQAVTTSKWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IDDLDGVPIKSLDDDLDGVPLDATEDSKKNEPIFKVAPSKWEAVDESELEAQAVTTSKWE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD LFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEEMTESKFSKYSEMSEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEEMTESKFSKYSEMSEEK
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD RAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERERDKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERERDKK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD DKEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DKEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERS
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD HKESSRSRSSHKDSPRDVSKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSPHRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HKESSRSRSSHKDSPRDVSKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSPHRS
              970       980       990      1000      1010      1020

                
pF1KSD HKKSKKNKH
       :::::::::
CCDS46 HKKSKKNKH
                




1029 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:18:51 2016 done: Thu Nov  3 01:18:51 2016
 Total Scan time:  4.340 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]