FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0341, 544 aa
  1>>>pF1KSDA0341 544 - 544 aa - 544 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4394+/-0.000825; mu= 1.7854+/- 0.050
 mean_var=242.5310+/-49.533, 0's: 0 Z-trim(116.2): 9  B-trim: 142 in 1/51
 Lambda= 0.082355
 statistics sampled from 16801 (16809) to 16801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.516), width:  16
 Scan time:  3.890

The best scores are:                                      opt bits E(32554)
CCDS34307.1 N4BP3 gene_id:23138|Hs108|chr5         ( 544) 3633 444.3 1.7e-124


>>CCDS34307.1 N4BP3 gene_id:23138|Hs108|chr5              (544 aa)
 initn: 3633 init1: 3633 opt: 3633  Z-score: 2348.7  bits: 444.3 E(32554): 1.7e-124
Smith-Waterman score: 3633; 99.8% identity (99.8% similar) in 544 aa overlap (1-544:1-544)

               10        20        30        40        50        60
pF1KSD MATAPGPAGIAMGSVGSLLERQDFSPEEPRAALAGSRGSRQPDGLLRKGLGQREFLSYLH
       :::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
CCDS34 MATAPGPAGIAMGSVGSLLERQDFSPEELRAALAGSRGSRQPDGLLRKGLGQREFLSYLH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LPKKDSKSTKNTKRAPRNEPADYATLYYREHSRAGDFSKTSLPERGRFDKCRIRPSVFKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LPKKDSKSTKNTKRAPRNEPADYATLYYREHSRAGDFSKTSLPERGRFDKCRIRPSVFKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD TAGNGKGFLSMQSLASHKGQKLWRSNGSLHTLACHPPLSPGPRASQARAQLLHALSLDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TAGNGKGFLSMQSLASHKGQKLWRSNGSLHTLACHPPLSPGPRASQARAQLLHALSLDEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GPEPEPSLSDSSSGGSFGRSPGTGPSPFSSSLGHLNHLGGSLDRASQGPKEAGPPAVLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPEPEPSLSDSSSGGSFGRSPGTGPSPFSSSLGHLNHLGGSLDRASQGPKEAGPPAVLSC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LPEPPPPYEFSCSSAEEMGAVLPETCEELKRGLGDEDGSNPFTQVLEERQRLWLAELKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LPEPPPPYEFSCSSAEEMGAVLPETCEELKRGLGDEDGSNPFTQVLEERQRLWLAELKRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD YVERLHEVTQKAERSERNLQLQLFMAQQEQRRLRKELRAQQGLAPEPRAPGTLPEADPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YVERLHEVTQKAERSERNLQLQLFMAQQEQRRLRKELRAQQGLAPEPRAPGTLPEADPSA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RPEEEARWEVCQKTAEISLLKQQLREAQAELAQKLAEIFSLKTQLRGSRAQAQAQDAELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RPEEEARWEVCQKTAEISLLKQQLREAQAELAQKLAEIFSLKTQLRGSRAQAQAQDAELV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RLREAVRSLQEQAPREEAPGSCETDDCKSRGLLGEAGGSEARDSAEQLRAELLQERLRGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RLREAVRSLQEQAPREEAPGSCETDDCKSRGLLGEAGGSEARDSAEQLRAELLQERLRGQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD EQALRFEQERRTWQEEKERVLRYQREIQGGYMDMYRRNQALEQELRALREPPTPWSPRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EQALRFEQERRTWQEEKERVLRYQREIQGGYMDMYRRNQALEQELRALREPPTPWSPRLE
              490       500       510       520       530       540

           
pF1KSD SSKI
       ::::
CCDS34 SSKI
           




544 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:20:14 2016 done: Thu Nov  3 01:20:14 2016
 Total Scan time:  3.890 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]