FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0352, 712 aa
  1>>>pF1KSDA0352 712 - 712 aa - 712 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5871+/-0.00114; mu= 1.4900+/- 0.068
 mean_var=371.7729+/-85.766, 0's: 0 Z-trim(112.9): 713  B-trim: 637 in 1/50
 Lambda= 0.066517
 statistics sampled from 12673 (13558) to 12673 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.416), width:  16
 Scan time:  3.500

The best scores are:                                      opt bits E(32554)
CCDS31839.1 ZBTB39 gene_id:9880|Hs108|chr12        ( 712) 4915 486.5 5.7e-137


>>CCDS31839.1 ZBTB39 gene_id:9880|Hs108|chr12             (712 aa)
 initn: 4915 init1: 4915 opt: 4915  Z-score: 2572.5  bits: 486.5 E(32554): 5.7e-137
Smith-Waterman score: 4915; 100.0% identity (100.0% similar) in 712 aa overlap (1-712:1-712)

               10        20        30        40        50        60
pF1KSD MGMRIKLQSTNHPNNLLKELNKCRLSETMCDVTIVVGSRSFPAHKAVLACAAGYFQNLFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGMRIKLQSTNHPNNLLKELNKCRLSETMCDVTIVVGSRSFPAHKAVLACAAGYFQNLFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NTGLDAARTYVVDFITPANFEKVLSFVYTSELFTDLINVGVIYEVAERLGMEDLLQACHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NTGLDAARTYVVDFITPANFEKVLSFVYTSELFTDLINVGVIYEVAERLGMEDLLQACHS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD TFPDLESTARAKPLTSTSESHSGTLSCPSAEPAHPLGELRGGGDYLGADRNYVLPSDAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TFPDLESTARAKPLTSTSESHSGTLSCPSAEPAHPLGELRGGGDYLGADRNYVLPSDAGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SYKEEEKNVASDANHSLHLPQPPPPPPKTEDHDTPAPFTSIPSMMTQPLLGTVSTGIQTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SYKEEEKNVASDANHSLHLPQPPPPPPKTEDHDTPAPFTSIPSMMTQPLLGTVSTGIQTS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TSSCQPYKVQSNGDFSKNSFLTPDNAVDITTGTNSCLSNSEHSKDPGFGQMDELQLEDLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TSSCQPYKVQSNGDFSKNSFLTPDNAVDITTGTNSCLSNSEHSKDPGFGQMDELQLEDLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DDDLQFEDPAEDIGTTEEVIELSDDSEDELAFGENDNRENKAMPCQVCKKVLEPNIQLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DDDLQFEDPAEDIGTTEEVIELSDDSEDELAFGENDNRENKAMPCQVCKKVLEPNIQLIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QHARDHVDLLTGNCKVCETHFQDRNSRVTHVLSHIGIFLFSCDMCETKFFTQWQLTLHRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QHARDHVDLLTGNCKVCETHFQDRNSRVTHVLSHIGIFLFSCDMCETKFFTQWQLTLHRR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DGIFENNIIVHPNDPLPGKLGLFSGAASPELKCAACGKVLAKDFHVVRGHILDHLNLKGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DGIFENNIIVHPNDPLPGKLGLFSGAASPELKCAACGKVLAKDFHVVRGHILDHLNLKGQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD ACSVCDQRHLNLCSLMWHTLSHLGISVFSCSVCANSFVDWHLLEKHMAVHQSLEDALFHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ACSVCDQRHLNLCSLMWHTLSHLGISVFSCSVCANSFVDWHLLEKHMAVHQSLEDALFHC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD RLCSQSFKSEAAYRYHVSQHKCNSGLDARPGFGLQHPALQKRKLPAEEFLGEELALQGQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RLCSQSFKSEAAYRYHVSQHKCNSGLDARPGFGLQHPALQKRKLPAEEFLGEELALQGQP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD GNSKYSCKVCGKRFAHTSEFNYHRRIHTGEKPYQCKVCHKFFRGRSTIKCHLKTHSGALM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GNSKYSCKVCGKRFAHTSEFNYHRRIHTGEKPYQCKVCHKFFRGRSTIKCHLKTHSGALM
              610       620       630       640       650       660

              670       680       690       700       710  
pF1KSD YRCTVCGHYSSTLNLMSKHVGVHKGSLPPDFTIEQTFMYIIHSKEADKNPDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YRCTVCGHYSSTLNLMSKHVGVHKGSLPPDFTIEQTFMYIIHSKEADKNPDS
              670       680       690       700       710  




712 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:21:37 2016 done: Thu Nov  3 01:21:37 2016
 Total Scan time:  3.500 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]