FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0355, 1070 aa
  1>>>pF1KSDA0355 1070 - 1070 aa - 1070 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4502+/-0.00103; mu= 0.4853+/- 0.062
 mean_var=332.2348+/-66.257, 0's: 0 Z-trim(114.3): 18  B-trim: 48 in 1/53
 Lambda= 0.070364
 statistics sampled from 14837 (14848) to 14837 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.456), width:  16
 Scan time:  3.730

The best scores are:                                      opt bits E(32554)
CCDS12436.1 KIAA0355 gene_id:9710|Hs108|chr19      (1070) 7315 757.2 4.2e-218


>>CCDS12436.1 KIAA0355 gene_id:9710|Hs108|chr19           (1070 aa)
 initn: 7315 init1: 7315 opt: 7315  Z-score: 4029.1  bits: 757.2 E(32554): 4.2e-218
Smith-Waterman score: 7315; 99.9% identity (100.0% similar) in 1070 aa overlap (1-1070:1-1070)

               10        20        30        40        50        60
pF1KSD MYCCSAQDSKMDYKRRFLLGGSKQKVQQHQQYPMPELGRALSAPLASTATTAPLGSLTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MYCCSAQDSKMDYKRRFLLGGSKQKVQQHQQYPMPELGRALSAPLASTATTAPLGSLTAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD GSCHHAMPHTTPIADIQQGISKYLDALNVFCRASTFLTDLFSTVFRNSHYSKAATQLKDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GSCHHAMPHTTPIADIQQGISKYLDALNVFCRASTFLTDLFSTVFRNSHYSKAATQLKDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QEHVMEVASRLTSAIKPEIAKMLMELSAGAANFTDQKEFSLQDIEVLGRCFLTVVQVHFQ
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QEHVMEAASRLTSAIKPEIAKMLMELSAGAANFTDQKEFSLQDIEVLGRCFLTVVQVHFQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FLTHALQKVQPVAHSCFAEVIVPEKKNSGSGGGLSGMGHTPEVEEAVRSWRGAAEATSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FLTHALQKVQPVAHSCFAEVIVPEKKNSGSGGGLSGMGHTPEVEEAVRSWRGAAEATSRL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RERGCDGCLAGIEVQQLFCSQSAAIPEHQLKELNIKIDSALQAYKIALESLGHCEYAMKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RERGCDGCLAGIEVQQLFCSQSAAIPEHQLKELNIKIDSALQAYKIALESLGHCEYAMKA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GFHLNPKAIEASLQGCCSEAEAQQTGRRQTPPQPMQCELPTVPVQIGSHFLKGVSFNESA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GFHLNPKAIEASLQGCCSEAEAQQTGRRQTPPQPMQCELPTVPVQIGSHFLKGVSFNESA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD ADNLKLKTHTMLQLMKEAGCYNGITSRDDFPVTEVLNQVCPSTWRGACKTAVQLLFGQAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ADNLKLKTHTMLQLMKEAGCYNGITSRDDFPVTEVLNQVCPSTWRGACKTAVQLLFGQAG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LVVVDTAQIENKEAYAPQISLEGSRIVVQVPSTWCLKEDPATMSLLQRSLDPEKTLGLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LVVVDTAQIENKEAYAPQISLEGSRIVVQVPSTWCLKEDPATMSLLQRSLDPEKTLGLVD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD VLYTAVLDLNRWRAGREQALPCIQIQLQREICDFGNQADLPSGNGNKSSGGLQKTFSKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VLYTAVLDLNRWRAGREQALPCIQIQLQREICDFGNQADLPSGNGNKSSGGLQKTFSKLT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SRFTKKASCTSSSSSTNYSIQNTPSKNIFIAGCSEEKAKMPGNIDTRLQSILNIGNFPRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SRFTKKASCTSSSSSTNYSIQNTPSKNIFIAGCSEEKAKMPGNIDTRLQSILNIGNFPRT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD TDPSQSAQNSSNTVANGFLMERRENFLHGDDGKDEKGMNLPTDQEMQEVIDFLSGFNMGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TDPSQSAQNSSNTVANGFLMERRENFLHGDDGKDEKGMNLPTDQEMQEVIDFLSGFNMGQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD SHQGSPLVTRHNSAATAMVTEQKAGAMQPQQPSLPVPPPPRAPQAGAHTPLTPQPGLAPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SHQGSPLVTRHNSAATAMVTEQKAGAMQPQQPSLPVPPPPRAPQAGAHTPLTPQPGLAPQ
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD QQSPKQQQPQVQYYQHLLQPIGPQQPPPQPRAPGKWVHGSSQQPAQAVGAGLSPLGQWPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QQSPKQQQPQVQYYQHLLQPIGPQQPPPQPRAPGKWVHGSSQQPAQAVGAGLSPLGQWPG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ISDLSSDLYSLGLVSSYMDNVMSEVLGQKPQGPRNNTWPNRDQSDGVFGMLGEILPFDPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ISDLSSDLYSLGLVSSYMDNVMSEVLGQKPQGPRNNTWPNRDQSDGVFGMLGEILPFDPA
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD VGSDPEFARYVAGVSQAMQQKRQAQHGRRPGNPRGNWPPMDDAHRTWPFPEFFTEGDGLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VGSDPEFARYVAGVSQAMQQKRQAQHGRRPGNPRGNWPPMDDAHRTWPFPEFFTEGDGLH
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD GGWSGAQGDSASSSDETSSANGDSLFSMFSGPDLVAAVKQRRKHSSGEQDTSTLPSPPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GGWSGAQGDSASSSDETSSANGDSLFSMFSGPDLVAAVKQRRKHSSGEQDTSTLPSPPLL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD TTVEDVNQDNKTKTWPPKAPWQHPSPLPSTLPSPSAPLYAVTSPGSQWNDTMQMLQSPVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TTVEDVNQDNKTKTWPPKAPWQHPSPLPSTLPSPSAPLYAVTSPGSQWNDTMQMLQSPVW
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070
pF1KSD AATNDCSAAAFSYVQTPPQPPPPPAHKAAPKGFKAFPGKGERRPAYLPQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AATNDCSAAAFSYVQTPPQPPPPPAHKAAPKGFKAFPGKGERRPAYLPQY
             1030      1040      1050      1060      1070




1070 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:23:12 2016 done: Thu Nov  3 01:23:12 2016
 Total Scan time:  3.730 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]