Result of FASTA (ccds) for
pF1KSDA0390
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0390, 1300 aa
1>>>pF1KSDA0390 1300 - 1300 aa - 1300 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.2742+/-0.00119; mu= -4.1956+/- 0.069
mean_var=633.9435+/-166.802, 0's: 0 Z-trim(112.1): 242 B-trim: 0 in 0/54
Lambda= 0.050939
statistics sampled from 12708 (12904) to 12708 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.396), width: 16
Scan time: 6.120
The best scores are: opt bits E(32554)
CCDS32984.1 ZNF536 gene_id:9745|Hs108|chr19 (1300) 8858 668.2 3.9e-191
CCDS74234.1 ZNF516 gene_id:9658|Hs108|chr18 (1163) 1000 90.6 2.5e-17
>>CCDS32984.1 ZNF536 gene_id:9745|Hs108|chr19 (1300 aa)
initn: 8858 init1: 8858 opt: 8858 Z-score: 3544.9 bits: 668.2 E(32554): 3.9e-191
Smith-Waterman score: 8858; 100.0% identity (100.0% similar) in 1300 aa overlap (1-1300:1-1300)
10 20 30 40 50 60
pF1KSD MEEASLCLGVSSAEPEAEPHLSGPVLNGQYAMSQKLHQITSQLSHAFPELHPRPNPEEKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEEASLCLGVSSAEPEAEPHLSGPVLNGQYAMSQKLHQITSQLSHAFPELHPRPNPEEKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PASLEEKAHVPMSGQPMGSQMALLANQLGREVDTSLNGRVDLQQFLNGQNLGIMSQMSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PASLEEKAHVPMSGQPMGSQMALLANQLGREVDTSLNGRVDLQQFLNGQNLGIMSQMSDI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EDDARKNRKYPCPLCGKRFRFNSILSLHMRTHTGEKPFKCPYCDHRAAQKGNLKIHLRTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EDDARKNRKYPCPLCGKRFRFNSILSLHMRTHTGEKPFKCPYCDHRAAQKGNLKIHLRTH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KLGNLGKGRGRVREENRLLHELEERAILRDKQLKGSLLQPRPDLKPPPHAQQAPLAACTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KLGNLGKGRGRVREENRLLHELEERAILRDKQLKGSLLQPRPDLKPPPHAQQAPLAACTL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ALQANHSVPDVAHPVPSPKPASVQEDAVAPAAGFRCTFCKGKFKKREELDRHIRILHKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ALQANHSVPDVAHPVPSPKPASVQEDAVAPAAGFRCTFCKGKFKKREELDRHIRILHKPY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD KCTLCDFAASQEEELISHVEKAHITAESAQGQGPNGGGEQSANEFRCEVCGQVFSQAWFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KCTLCDFAASQEEELISHVEKAHITAESAQGQGPNGGGEQSANEFRCEVCGQVFSQAWFL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD KGHMRKHKDSFEHCCQICGRRFKEPWFLKNHMKVHLNKLSVKNKSPSDPEVPVPMGGMSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KGHMRKHKDSFEHCCQICGRRFKEPWFLKNHMKVHLNKLSVKNKSPSDPEVPVPMGGMSQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD EAHANLYSRYLSCLQSGFMTPDKAGLSEPSQLYGKGELPMKEKEALGKLLSPISSMAHGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EAHANLYSRYLSCLQSGFMTPDKAGLSEPSQLYGKGELPMKEKEALGKLLSPISSMAHGV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD PEGDKHSLLGCLNLVPPLKSSCIERLQAAAKAAEMDPVNSYQAWQLMARGMAMEHGFLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PEGDKHSLLGCLNLVPPLKSSCIERLQAAAKAAEMDPVNSYQAWQLMARGMAMEHGFLSK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD EHPLQRNHEDTLANAGVLFDKEKREYVLVGADGSKQKMPADLVHSTKVGSQRDLPSKLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EHPLQRNHEDTLANAGVLFDKEKREYVLVGADGSKQKMPADLVHSTKVGSQRDLPSKLDP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LESSRDFLSHGLNQTLEYNLQGPGNMKEKPTECPDCGRVFRTYHQVVVHSRVHKRDRKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LESSRDFLSHGLNQTLEYNLQGPGNMKEKPTECPDCGRVFRTYHQVVVHSRVHKRDRKGE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD EDGLHVGLDERRGSGSDQESQSVSRSTTPGSSNVTEESGVGGGLSQTGSAQEDSPHPSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EDGLHVGLDERRGSGSDQESQSVSRSTTPGSSNVTEESGVGGGLSQTGSAQEDSPHPSSP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD SSSDIGEEAGRSAGVQQPALLRDRSLGSAMKDCPYCGKTFRTSHHLKVHLRIHTGEKPYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSSDIGEEAGRSAGVQQPALLRDRSLGSAMKDCPYCGKTFRTSHHLKVHLRIHTGEKPYK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD CPHCDYAGTQSASLKYHLERHHRERQNGAGPLSGQPPNQDHKDEMSSKASLFIRPDILRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CPHCDYAGTQSASLKYHLERHHRERQNGAGPLSGQPPNQDHKDEMSSKASLFIRPDILRG
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD AFKGLPGIDFRGGPASQQWTSGVLSSGDHSGQATGMSSEVPSDALKGTDLPSKSTHFSEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AFKGLPGIDFRGGPASQQWTSGVLSSGDHSGQATGMSSEVPSDALKGTDLPSKSTHFSEI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD GRAYQSIVSNGVNFQGSLQAFMDSFVLSSLKKEKDMKDKALADPPSMKVHGVDGGEEKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GRAYQSIVSNGVNFQGSLQAFMDSFVLSSLKKEKDMKDKALADPPSMKVHGVDGGEEKPS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD GKSSQRKSEKSQYEPLDLSVRPDAASLPGSSVTVQDSIAWHGCLFCAFTTSSMELMALHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GKSSQRKSEKSQYEPLDLSVRPDAASLPGSSVTVQDSIAWHGCLFCAFTTSSMELMALHL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD QANHLGKAKRKDNTIGVTVNCKDQAREASKMALLPSLQSNKDLGLSNMISSLDSASEKMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QANHLGKAKRKDNTIGVTVNCKDQAREASKMALLPSLQSNKDLGLSNMISSLDSASEKMA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD QGQLKETLGEQKSGAWTGHVDPAFCNFPSDFYKQFGVYPGMVGSGASSSCPNKEPDGKAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QGQLKETLGEQKSGAWTGHVDPAFCNFPSDFYKQFGVYPGMVGSGASSSCPNKEPDGKAH
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD SEEDVPILIPETTSKNTTDDLSDIASSEDMDSSKGENNDEEDVETEPEMMTKPLSALSKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SEEDVPILIPETTSKNTTDDLSDIASSEDMDSSKGENNDEEDVETEPEMMTKPLSALSKD
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD SSSDGGDSLQPTGTSQPVQGLVSPLSQAPEKQWHSQGLLQAQDPLAGLPKPERGPQSLDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSSDGGDSLQPTGTSQPVQGLVSPLSQAPEKQWHSQGLLQAQDPLAGLPKPERGPQSLDK
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300
pF1KSD PMNMLSVLRAYSSDGLAAFNGLASSTANSGCIKRPDLCGK
::::::::::::::::::::::::::::::::::::::::
CCDS32 PMNMLSVLRAYSSDGLAAFNGLASSTANSGCIKRPDLCGK
1270 1280 1290 1300
>>CCDS74234.1 ZNF516 gene_id:9658|Hs108|chr18 (1163 aa)
initn: 1224 init1: 377 opt: 1000 Z-score: 424.4 bits: 90.6 E(32554): 2.5e-17
Smith-Waterman score: 1254; 38.3% identity (62.2% similar) in 622 aa overlap (121-727:25-606)
100 110 120 130 140 150
pF1KSD EVDTSLNGRVDLQQFLNGQNLGIMSQMSDIEDDARKNRKYPCPLCGKRFRFNSILSLHMR
: :. : . : .::: : :.: :: :::
CCDS74 MDRNREAEMELRRGPSPTRAGRGHEVDGDKATCHTCCICGKSFPFQSSLSQHMR
10 20 30 40 50
160 170 180 190 200 210
pF1KSD THTGEKPFKCPYCDHRAAQKGNLKIHLRTHKLGNLGKGRGRVREENRLLHELEERAILRD
::::::.:::::::::.::::::::.:.:. :.: .:. : . : : .:
CCDS74 KHTGEKPYKCPYCDHRASQKGNLKIHIRSHRTGTLIQGH----EPEAGEAPLGE---MRA
60 70 80 90 100
220 230 240 250 260 270
pF1KSD KQLKGSLLQPRPDLKPPPHAQQAPLAACTLALQANHSVPDVAHPVPSPKPASVQEDAVAP
.. . .: . . . .. : . . : : .. . . ... .: ::
CCDS74 SEGLDACASPTKSASACNRLLNGASQADGARVLNGASQADSGRVLLRSSKKGAEGSACAP
110 120 130 140 150 160
280 290 300 310 320
pF1KSD A---AGFRCTFCKGKFKKREELDRHIRILHKPYKCTLCDFAASQEEELISHVEKAHITAE
. :. .:.:::..:.....:. :.. :::.:: ::..:. .:: :.::.:. ::::.
CCDS74 GEAKAAVQCSFCKSQFERKKDLELHVHQAHKPFKCRLCSYATLREESLLSHIERDHITAQ
170 180 190 200 210 220
330 340 350 360 370 380
pF1KSD SAQGQGP----NGGGEQSANEFRCEVCGQVFSQAWFLKGHMRKHKDSFEHCCQICGRRFK
. :.: :: : : .:: ::::::.:::.::::.::.::. ::.: :.:::::::
CCDS74 GP-GSGEACVENGKPELSPGEFPCEVCGQAFSQTWFLKAHMKKHRGSFDHGCHICGRRFK
230 240 250 260 270 280
390 400 410 420 430 440
pF1KSD EPWFLKNHMKVHLNKLSVKNKSPSDPEVPVPMGGMSQEAH--ANLYSRYLSCLQSGFMTP
::::::::::.: : . ::. :. . . .... :: :.: : : : . : .
CCDS74 EPWFLKNHMKAHGPKTGSKNRPKSELDPIATINNVVQEEVIVAGL-SLYEVCAKCGNLFT
290 300 310 320 330 340
450 460 470 480 490 500
pF1KSD DKAGLSEPSQLYGKGELPMKEKEALGKLLSPISSMAHGVPEGDKHSLLGCLNLVPPLKSS
. .:. . .. .. :: .. .: :.: : :. .: :::: : ..
CCDS74 NLDSLNAHNAIH-------RRVEA-SRTRAPAEEGAEG-PSDTKQFFLQCLNLRPSAAGD
350 360 370 380 390
510 520 530 540 550 560
pF1KSD CIERLQAAAKAAEMDPVNSYQAWQLMARGMAMEHGFLSKEHPLQRNHEDTLANAGVLFDK
::. ..::.::::::::::: .:: . : . :. :. . : . : :::
CCDS74 SCPGTQAGRRVAELDPVNSYQAWQLATRGKVAEPA----EY-LKYGAWDEALAGDVAFDK
400 410 420 430 440 450
570 580 590 600 610
pF1KSD EKREYVLVGADGSK--QKMPADLVHSTKVGSQRDLPS---KLDPLESSRDFLSHGLNQTL
..::::::. . : : :: : .: :. .::: ..: :.
CCDS74 DRREYVLVSQEKRKREQDAPAAQGPPRKRASGPGDPAPAGHLDPRSAARP------NRRA
460 470 480 490 500
620 630 640 650 660 670
pF1KSD EYNLQGPGNMKEKPTECPDCGRVFRTYHQVVVHSRVHKRDRKGEE-DGLHVGLDERRGSG
. : : : .:: .::..::::::.:.:::::.: :. .. :: ... : :
CCDS74 AATT-GQG----KSSECFECGKIFRTYHQMVLHSRVHRRARRERDSDGDRAA---RARCG
510 520 530 540 550
680 690 700 710 720 730
pF1KSD SDQESQSVSRSTTPGSSNVTEESGVGGGLSQTGSAQEDSPHPSSPSSSDIGEEAGRSAGV
: .:..:.:. ..:::. .. .: :.::.. : ::: . ..: . :.
CCDS74 SLSEGDSASQPSSPGSACAAADSP-GSGLAD--EAAEDSGEEGAPEPAPGGQPRRCCFSE
560 570 580 590 600 610
740 750 760 770 780 790
pF1KSD QQPALLRDRSLGSAMKDCPYCGKTFRTSHHLKVHLRIHTGEKPYKCPHCDYAGTQSASLK
CCDS74 EVTSTELSSGDQSHKMGDNASERDTGESKAGIAASVSILENSSRETSRRQEQHRFSMDLK
620 630 640 650 660 670
1300 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:36:12 2016 done: Thu Nov 3 01:36:13 2016
Total Scan time: 6.120 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]