FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0398, 476 aa
  1>>>pF1KSDA0398 476 - 476 aa - 476 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5890+/-0.00104; mu= 12.4095+/- 0.063
 mean_var=98.1523+/-19.047, 0's: 0 Z-trim(105.8): 24  B-trim: 22 in 2/50
 Lambda= 0.129457
 statistics sampled from 8634 (8639) to 8634 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.265), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS11867.1 RNMT gene_id:8731|Hs108|chr18          ( 476) 3138 596.7 1.7e-170
CCDS77156.1 RNMT gene_id:8731|Hs108|chr18          ( 504) 3065 583.1 2.3e-166


>>CCDS11867.1 RNMT gene_id:8731|Hs108|chr18               (476 aa)
 initn: 3138 init1: 3138 opt: 3138  Z-score: 3174.2  bits: 596.7 E(32554): 1.7e-170
Smith-Waterman score: 3138; 100.0% identity (100.0% similar) in 476 aa overlap (1-476:1-476)

               10        20        30        40        50        60
pF1KSD MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
              370       380       390       400       410       420

              430       440       450       460       470      
pF1KSD YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
              430       440       450       460       470      

>>CCDS77156.1 RNMT gene_id:8731|Hs108|chr18               (504 aa)
 initn: 3150 init1: 3064 opt: 3065  Z-score: 3100.1  bits: 583.1 E(32554): 2.3e-166
Smith-Waterman score: 3065; 98.3% identity (99.2% similar) in 473 aa overlap (1-473:1-473)

               10        20        30        40        50        60
pF1KSD MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
              370       380       390       400       410       420

              430       440       450       460       470          
pF1KSD YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ    
       :::::::::::::::::::::::::::::::::::::::::::: . ...  :       
CCDS77 YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATRLTVTIMREAWLSTVG
              430       440       450       460       470       480

CCDS77 PGRAPVAASSVKWGTPRPAMQFIL
              490       500    




476 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:36:56 2016 done: Thu Nov  3 01:36:56 2016
 Total Scan time:  2.700 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]