Result of FASTA (omim) for
pF1KSDA0410
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0410, 485 aa
1>>>pF1KSDA0410 485 - 485 aa - 485 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7880+/-0.000445; mu= 2.7863+/- 0.028
mean_var=228.6442+/-48.163, 0's: 0 Z-trim(117.2): 60 B-trim: 74 in 1/55
Lambda= 0.084819
statistics sampled from 28865 (28924) to 28865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.339), width: 16
Scan time: 7.030
The best scores are: opt bits E(85289)
XP_005266657 (OMIM: 607615) PREDICTED: nucleoporin ( 566) 2997 380.0 9.2e-105
XP_011533630 (OMIM: 607615) PREDICTED: nucleoporin ( 570) 2996 379.9 1e-104
NP_054808 (OMIM: 607615) nucleoporin p58/p45 isofo ( 599) 2996 379.9 1.1e-104
NP_001008564 (OMIM: 607615) nucleoporin p58/p45 is ( 587) 2465 315.0 3.8e-85
XP_016876369 (OMIM: 607615) PREDICTED: nucleoporin ( 325) 1299 172.1 2.2e-42
XP_011533631 (OMIM: 607615) PREDICTED: nucleoporin ( 325) 1299 172.1 2.2e-42
XP_016876370 (OMIM: 607615) PREDICTED: nucleoporin ( 325) 1299 172.1 2.2e-42
XP_016868342 (OMIM: 615753) PREDICTED: nuclear env ( 984) 236 42.4 0.0071
XP_016868343 (OMIM: 615753) PREDICTED: nuclear env ( 984) 236 42.4 0.0071
XP_006716259 (OMIM: 615753) PREDICTED: nuclear env ( 984) 236 42.4 0.0071
NP_742017 (OMIM: 615753) nuclear envelope pore mem ( 984) 236 42.4 0.0071
XP_011515032 (OMIM: 615753) PREDICTED: nuclear env (1153) 236 42.4 0.008
XP_005250784 (OMIM: 615753) PREDICTED: nuclear env (1190) 236 42.5 0.0082
XP_005250783 (OMIM: 615753) PREDICTED: nuclear env (1249) 236 42.5 0.0085
>>XP_005266657 (OMIM: 607615) PREDICTED: nucleoporin p58 (566 aa)
initn: 3129 init1: 2997 opt: 2997 Z-score: 2001.8 bits: 380.0 E(85289): 9.2e-105
Smith-Waterman score: 2997; 99.8% identity (100.0% similar) in 480 aa overlap (1-480:1-480)
10 20 30 40 50 60
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_005 RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGF
430 440 450 460 470 480
pF1KSD NAFKL
XP_005 GTSSGFGCSTTGASTFGFGTTNKPSGSLSAGFGSSSTSGFNFSNPGITASAGLTFGVSNP
490 500 510 520 530 540
>>XP_011533630 (OMIM: 607615) PREDICTED: nucleoporin p58 (570 aa)
initn: 2996 init1: 2996 opt: 2996 Z-score: 2001.1 bits: 379.9 E(85289): 1e-104
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)
10 20 30 40 50 60
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGP
430 440 450 460 470 480
pF1KSD NAFKL
XP_011 QPSLGVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGS
490 500 510 520 530 540
>>NP_054808 (OMIM: 607615) nucleoporin p58/p45 isoform a (599 aa)
initn: 2996 init1: 2996 opt: 2996 Z-score: 2000.8 bits: 379.9 E(85289): 1.1e-104
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)
10 20 30 40 50 60
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGP
430 440 450 460 470 480
pF1KSD NAFKL
NP_054 QPSLGVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGS
490 500 510 520 530 540
>>NP_001008564 (OMIM: 607615) nucleoporin p58/p45 isofor (587 aa)
initn: 2406 init1: 2406 opt: 2465 Z-score: 1649.7 bits: 315.0 E(85289): 3.8e-85
Smith-Waterman score: 2896; 97.5% identity (97.5% similar) in 479 aa overlap (1-479:1-467)
10 20 30 40 50 60
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
:::::::::::::::::::::::: ::::::::::::::::::::::::
NP_001 SGFGTGLFGSKPATGFTLGGTNTG------------TPATTSAATTGFSLGFNKPAASAT
70 80 90 100
130 140 150 160 170 180
pF1KSD PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KSD SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KSD ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
230 240 250 260 270 280
310 320 330 340 350 360
pF1KSD IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
290 300 310 320 330 340
370 380 390 400 410 420
pF1KSD RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
350 360 370 380 390 400
430 440 450 460 470 480
pF1KSD RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGP
410 420 430 440 450 460
pF1KSD NAFKL
NP_001 QPSLGVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGS
470 480 490 500 510 520
>>XP_016876369 (OMIM: 607615) PREDICTED: nucleoporin p58 (325 aa)
initn: 1299 init1: 1299 opt: 1299 Z-score: 882.0 bits: 172.1 E(85289): 2.2e-42
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 205 aa overlap (275-479:1-205)
250 260 270 280 290 300
pF1KSD ENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRN
::::::::::::::::::::::::::::::
XP_016 MSSKAMLKVQEDIKALKQLLSLAANGIQRN
10 20 30
310 320 330 340 350 360
pF1KSD TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
40 50 60 70 80 90
370 380 390 400 410 420
pF1KSD EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
100 110 120 130 140 150
430 440 450 460 470 480
pF1KSD LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGLNAFK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSL
160 170 180 190 200 210
pF1KSD L
XP_016 GVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGSLSAG
220 230 240 250 260 270
>>XP_011533631 (OMIM: 607615) PREDICTED: nucleoporin p58 (325 aa)
initn: 1299 init1: 1299 opt: 1299 Z-score: 882.0 bits: 172.1 E(85289): 2.2e-42
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 205 aa overlap (275-479:1-205)
250 260 270 280 290 300
pF1KSD ENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRN
::::::::::::::::::::::::::::::
XP_011 MSSKAMLKVQEDIKALKQLLSLAANGIQRN
10 20 30
310 320 330 340 350 360
pF1KSD TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
40 50 60 70 80 90
370 380 390 400 410 420
pF1KSD EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
100 110 120 130 140 150
430 440 450 460 470 480
pF1KSD LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGLNAFK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSL
160 170 180 190 200 210
pF1KSD L
XP_011 GVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGSLSAG
220 230 240 250 260 270
>>XP_016876370 (OMIM: 607615) PREDICTED: nucleoporin p58 (325 aa)
initn: 1299 init1: 1299 opt: 1299 Z-score: 882.0 bits: 172.1 E(85289): 2.2e-42
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 205 aa overlap (275-479:1-205)
250 260 270 280 290 300
pF1KSD ENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRN
::::::::::::::::::::::::::::::
XP_016 MSSKAMLKVQEDIKALKQLLSLAANGIQRN
10 20 30
310 320 330 340 350 360
pF1KSD TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
40 50 60 70 80 90
370 380 390 400 410 420
pF1KSD EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
100 110 120 130 140 150
430 440 450 460 470 480
pF1KSD LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGLNAFK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSL
160 170 180 190 200 210
pF1KSD L
XP_016 GVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGSLSAG
220 230 240 250 260 270
>>XP_016868342 (OMIM: 615753) PREDICTED: nuclear envelop (984 aa)
initn: 167 init1: 124 opt: 236 Z-score: 172.6 bits: 42.4 E(85289): 0.0071
Smith-Waterman score: 236; 31.3% identity (65.9% similar) in 211 aa overlap (13-212:767-969)
10 20 30 40
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGL
:.: : : .:.. .::. :::.:. :
XP_016 APAAAPTPAPPSMIKVVPAYVPTPIHPIFGGATHSAFGLKATAS--AFGAPASSQPAFGG
740 750 760 770 780 790
50 60 70 80 90
pF1KSD N----FGNLGSTSTPATTSAPSSGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTP
. :: :.. :::.. ::: ....::: . ::.::. .. : . . :....::
XP_016 STAVFFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGS-AAPAGSGSFGINVATP
800 810 820 830 840 850
100 110 120 130 140 150
pF1KSD ATTSAATTG-FSLGFNKPAASAT--PFALPITSTSASGLTLSSALTSTPAASTGFTLNNL
.... ::: ::.: .. ...:: ::: . . .: : : .:. . ..:: . .
XP_016 GSST--TTGAFSFGAGQSGSTATSTPFAGGL-GQNALGTTGQSTPFAFNVSSTTESKPVF
860 870 880 890 900 910
160 170 180 190 200 210
pF1KSD GGTTATT---TTASTGLSLGGALAGLGGSLFQSTN-TGTSGLGQNALGLTLGTTAATSTA
:::.. : .: . :.. .:. ..:.: . . .:.. .:. ::....: :...:
XP_016 GGTATPTFGLNTPAPGVGTSGSSLSFGASSAPAQGFVGVAPFGSAALSFSIG--AGSKTP
920 930 940 950 960
220 230 240 250 260 270
pF1KSD GNEGLGGIDFSSSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEE
:
XP_016 GARQRLQARRQHTRKK
970 980
>>XP_016868343 (OMIM: 615753) PREDICTED: nuclear envelop (984 aa)
initn: 167 init1: 124 opt: 236 Z-score: 172.6 bits: 42.4 E(85289): 0.0071
Smith-Waterman score: 236; 31.3% identity (65.9% similar) in 211 aa overlap (13-212:767-969)
10 20 30 40
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGL
:.: : : .:.. .::. :::.:. :
XP_016 APAAAPTPAPPSMIKVVPAYVPTPIHPIFGGATHSAFGLKATAS--AFGAPASSQPAFGG
740 750 760 770 780 790
50 60 70 80 90
pF1KSD N----FGNLGSTSTPATTSAPSSGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTP
. :: :.. :::.. ::: ....::: . ::.::. .. : . . :....::
XP_016 STAVFFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGS-AAPAGSGSFGINVATP
800 810 820 830 840 850
100 110 120 130 140 150
pF1KSD ATTSAATTG-FSLGFNKPAASAT--PFALPITSTSASGLTLSSALTSTPAASTGFTLNNL
.... ::: ::.: .. ...:: ::: . . .: : : .:. . ..:: . .
XP_016 GSST--TTGAFSFGAGQSGSTATSTPFAGGL-GQNALGTTGQSTPFAFNVSSTTESKPVF
860 870 880 890 900 910
160 170 180 190 200 210
pF1KSD GGTTATT---TTASTGLSLGGALAGLGGSLFQSTN-TGTSGLGQNALGLTLGTTAATSTA
:::.. : .: . :.. .:. ..:.: . . .:.. .:. ::....: :...:
XP_016 GGTATPTFGLNTPAPGVGTSGSSLSFGASSAPAQGFVGVAPFGSAALSFSIG--AGSKTP
920 930 940 950 960
220 230 240 250 260 270
pF1KSD GNEGLGGIDFSSSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEE
:
XP_016 GARQRLQARRQHTRKK
970 980
>>XP_006716259 (OMIM: 615753) PREDICTED: nuclear envelop (984 aa)
initn: 167 init1: 124 opt: 236 Z-score: 172.6 bits: 42.4 E(85289): 0.0071
Smith-Waterman score: 236; 31.3% identity (65.9% similar) in 211 aa overlap (13-212:767-969)
10 20 30 40
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGL
:.: : : .:.. .::. :::.:. :
XP_006 APAAAPTPAPPSMIKVVPAYVPTPIHPIFGGATHSAFGLKATAS--AFGAPASSQPAFGG
740 750 760 770 780 790
50 60 70 80 90
pF1KSD N----FGNLGSTSTPATTSAPSSGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTP
. :: :.. :::.. ::: ....::: . ::.::. .. : . . :....::
XP_006 STAVFFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGS-AAPAGSGSFGINVATP
800 810 820 830 840 850
100 110 120 130 140 150
pF1KSD ATTSAATTG-FSLGFNKPAASAT--PFALPITSTSASGLTLSSALTSTPAASTGFTLNNL
.... ::: ::.: .. ...:: ::: . . .: : : .:. . ..:: . .
XP_006 GSST--TTGAFSFGAGQSGSTATSTPFAGGL-GQNALGTTGQSTPFAFNVSSTTESKPVF
860 870 880 890 900 910
160 170 180 190 200 210
pF1KSD GGTTATT---TTASTGLSLGGALAGLGGSLFQSTN-TGTSGLGQNALGLTLGTTAATSTA
:::.. : .: . :.. .:. ..:.: . . .:.. .:. ::....: :...:
XP_006 GGTATPTFGLNTPAPGVGTSGSSLSFGASSAPAQGFVGVAPFGSAALSFSIG--AGSKTP
920 930 940 950 960
220 230 240 250 260 270
pF1KSD GNEGLGGIDFSSSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEE
:
XP_006 GARQRLQARRQHTRKK
970 980
485 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:38:00 2016 done: Thu Nov 3 01:38:01 2016
Total Scan time: 7.030 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]