FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0513, 411 aa
  1>>>pF1KSDA0513 411 - 411 aa - 411 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0392+/-0.000692; mu= 9.5147+/- 0.042
 mean_var=101.6433+/-20.420, 0's: 0 Z-trim(112.5): 5  B-trim: 144 in 1/50
 Lambda= 0.127214
 statistics sampled from 13214 (13217) to 13214 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.406), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS32499.1 KIAA0513 gene_id:9764|Hs108|chr16      ( 411) 2790 522.0 3.9e-148
CCDS67091.1 KIAA0513 gene_id:9764|Hs108|chr16      ( 401) 2222 417.8 9.2e-117
CCDS73919.1 KIAA0513 gene_id:9764|Hs108|chr16      ( 301) 2035 383.4 1.5e-106


>>CCDS32499.1 KIAA0513 gene_id:9764|Hs108|chr16           (411 aa)
 initn: 2790 init1: 2790 opt: 2790  Z-score: 2772.9  bits: 522.0 E(32554): 3.9e-148
Smith-Waterman score: 2790; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KSD METPEVPVGSLIDFGPEAPTSSPLEAPPPVLQDGDGSLGDGASESETTESADSENDMGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 METPEVPVGSLIDFGPEAPTSSPLEAPPPVLQDGDGSLGDGASESETTESADSENDMGES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PSHPSWDQDRRSSSNESFSSNQSTESTQDEETLALRDFMRGYVEKIFSGGEDLDQEEKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PSHPSWDQDRRSSSNESFSSNQSTESTQDEETLALRDFMRGYVEKIFSGGEDLDQEEKAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD FGEYCSSENGKGREWFARYVSAQRCNSKCVSEATFYRLVQSFAVVLFECHQMDDFGPAKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FGEYCSSENGKGREWFARYVSAQRCNSKCVSEATFYRLVQSFAVVLFECHQMDDFGPAKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LMTMCFTYYHIGKPQLLPPESREKPAGSIDSYLKSANSWLAEKKDIAERLLKNTSARTEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LMTMCFTYYHIGKPQLLPPESREKPAGSIDSYLKSANSWLAEKKDIAERLLKNTSARTEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VKGFFGGLETKLKGPLARRNEEDENKPQEKRPRAVTAYSPEDEKKGEKIYLYTHLKQQPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VKGFFGGLETKLKGPLARRNEEDENKPQEKRPRAVTAYSPEDEKKGEKIYLYTHLKQQPI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD WHTLRFWNAAFFDAVHCERTKRSPTTRGDAGEEEEKREKWCHMTQEERDDSLRFNENITF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WHTLRFWNAAFFDAVHCERTKRSPTTRGDAGEEEEKREKWCHMTQEERDDSLRFNENITF
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KSD GQLGTFTHNMLAFGLNKKLCNDFLKKQAVIGNLDEEQYKLLSDHIEQMATE
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GQLGTFTHNMLAFGLNKKLCNDFLKKQAVIGNLDEEQYKLLSDHIEQMATE
              370       380       390       400       410 

>>CCDS67091.1 KIAA0513 gene_id:9764|Hs108|chr16           (401 aa)
 initn: 2222 init1: 2222 opt: 2222  Z-score: 2209.7  bits: 417.8 E(32554): 9.2e-117
Smith-Waterman score: 2694; 97.6% identity (97.6% similar) in 411 aa overlap (1-411:1-401)

               10        20        30        40        50        60
pF1KSD METPEVPVGSLIDFGPEAPTSSPLEAPPPVLQDGDGSLGDGASESETTESADSENDMGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 METPEVPVGSLIDFGPEAPTSSPLEAPPPVLQDGDGSLGDGASESETTESADSENDMGES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PSHPSWDQDRRSSSNESFSSNQSTESTQDEETLALRDFMRGYVEKIFSGGEDLDQEEKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PSHPSWDQDRRSSSNESFSSNQSTESTQDEETLALRDFMRGYVEKIFSGGEDLDQEEKAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD FGEYCSSENGKGREWFARYVSAQRCNSKCVSEATFYRLVQSFAVVLFECHQMDDFGPAKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 FGEYCSSENGKGREWFARYVSAQRCNSKCVSEATFYRLVQSFAVVLFECHQMDDFGPAKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LMTMCFTYYHIGKPQLLPPESREKPAGSIDSYLKSANSWLAEKKDIAERLLKNTSARTEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LMTMCFTYYHIGKPQLLPPESREKPAGSIDSYLKSANSWLAEKKDIAERLLKNTSARTEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VKGFFGGLETKLKGPLARRNEEDENKPQEKRPRAVTAYSPEDEKKGEKIYLYTHLKQQPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 VKGFFGGLETKLKGPLARRNEEDENKPQEKRPRAVTAYSPEDEKKGEKIYLYTHLKQQPI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD WHTLRFWNAAFFDAVHCERTKRSPTTRGDAGEEEEKREKWCHMTQEERDDSLRFNENITF
       :::::::::::::::::::::::::::          :::::::::::::::::::::::
CCDS67 WHTLRFWNAAFFDAVHCERTKRSPTTR----------EKWCHMTQEERDDSLRFNENITF
              310       320                 330       340       350

              370       380       390       400       410 
pF1KSD GQLGTFTHNMLAFGLNKKLCNDFLKKQAVIGNLDEEQYKLLSDHIEQMATE
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GQLGTFTHNMLAFGLNKKLCNDFLKKQAVIGNLDEEQYKLLSDHIEQMATE
              360       370       380       390       400 

>>CCDS73919.1 KIAA0513 gene_id:9764|Hs108|chr16           (301 aa)
 initn: 2035 init1: 2035 opt: 2035  Z-score: 2026.2  bits: 383.4 E(32554): 1.5e-106
Smith-Waterman score: 2035; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KSD METPEVPVGSLIDFGPEAPTSSPLEAPPPVLQDGDGSLGDGASESETTESADSENDMGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 METPEVPVGSLIDFGPEAPTSSPLEAPPPVLQDGDGSLGDGASESETTESADSENDMGES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PSHPSWDQDRRSSSNESFSSNQSTESTQDEETLALRDFMRGYVEKIFSGGEDLDQEEKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSHPSWDQDRRSSSNESFSSNQSTESTQDEETLALRDFMRGYVEKIFSGGEDLDQEEKAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD FGEYCSSENGKGREWFARYVSAQRCNSKCVSEATFYRLVQSFAVVLFECHQMDDFGPAKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FGEYCSSENGKGREWFARYVSAQRCNSKCVSEATFYRLVQSFAVVLFECHQMDDFGPAKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LMTMCFTYYHIGKPQLLPPESREKPAGSIDSYLKSANSWLAEKKDIAERLLKNTSARTEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LMTMCFTYYHIGKPQLLPPESREKPAGSIDSYLKSANSWLAEKKDIAERLLKNTSARTEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VKGFFGGLETKLKGPLARRNEEDENKPQEKRPRAVTAYSPEDEKKGEKIYLYTHLKQQPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VKGFFGGLETKLKGPLARRNEEDENKPQEKRPRAVTAYSPEDEKKGEKIYLYTHLKQQPI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD WHTLRFWNAAFFDAVHCERTKRSPTTRGDAGEEEEKREKWCHMTQEERDDSLRFNENITF
       :                                                           
CCDS73 W                                                           
                                                                   




411 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:54:10 2016 done: Thu Nov  3 01:54:10 2016
 Total Scan time:  2.220 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]