Result of FASTA (omim) for
pF1KSDA0529
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0529, 952 aa
1>>>pF1KSDA0529 952 - 952 aa - 952 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4868+/-0.000459; mu= 15.6161+/- 0.028
mean_var=106.1345+/-20.725, 0's: 0 Z-trim(112.4): 244 B-trim: 0 in 0/54
Lambda= 0.124493
statistics sampled from 20983 (21246) to 20983 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.249), width: 16
Scan time: 9.140
The best scores are: opt bits E(85289)
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 6535 1185.6 0
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 4983 906.8 0
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 4983 906.8 0
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 4983 906.8 0
XP_005269318 (OMIM: 604731) PREDICTED: ubiquitin c ( 648) 4438 808.8 0
XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin c ( 775) 3505 641.3 5.6e-183
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 1642 306.7 3.6e-82
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 1639 306.2 5e-82
NP_001239008 (OMIM: 604731) ubiquitin carboxyl-ter ( 235) 1554 290.6 6.5e-78
XP_005272731 (OMIM: 300050) PREDICTED: ubiquitin c ( 690) 1461 274.1 1.7e-72
XP_011542290 (OMIM: 300050) PREDICTED: ubiquitin c ( 690) 1461 274.1 1.7e-72
NP_004642 (OMIM: 300050) ubiquitin carboxyl-termin ( 963) 1461 274.2 2.2e-72
NP_001238806 (OMIM: 603486) ubiquitin carboxyl-ter ( 313) 1135 215.4 3.7e-55
XP_016880722 (OMIM: 607740) PREDICTED: ubiquitin c (1558) 1124 213.8 5.3e-54
XP_011523678 (OMIM: 607740) PREDICTED: ubiquitin c (1601) 1124 213.9 5.5e-54
NP_115971 (OMIM: 607740) ubiquitin carboxyl-termin (1604) 1124 213.9 5.5e-54
XP_011523674 (OMIM: 607740) PREDICTED: ubiquitin c (1620) 1124 213.9 5.5e-54
XP_016880723 (OMIM: 607740) PREDICTED: ubiquitin c (1288) 1111 211.5 2.3e-53
XP_011523681 (OMIM: 607740) PREDICTED: ubiquitin c (1327) 1111 211.5 2.4e-53
XP_011523680 (OMIM: 607740) PREDICTED: ubiquitin c (1572) 1111 211.5 2.7e-53
XP_011523677 (OMIM: 607740) PREDICTED: ubiquitin c (1608) 1111 211.5 2.8e-53
XP_011523676 (OMIM: 607740) PREDICTED: ubiquitin c (1615) 1111 211.5 2.8e-53
XP_011523675 (OMIM: 607740) PREDICTED: ubiquitin c (1618) 1111 211.5 2.8e-53
XP_011523673 (OMIM: 607740) PREDICTED: ubiquitin c (1634) 1111 211.5 2.8e-53
XP_011522359 (OMIM: 604334) PREDICTED: ubiquitin c (1384) 1108 210.9 3.6e-53
NP_001291213 (OMIM: 604334) ubiquitin carboxyl-ter (1406) 1108 210.9 3.6e-53
XP_011522353 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522358 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522355 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522354 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_016880779 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522352 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
NP_004496 (OMIM: 604334) ubiquitin carboxyl-termin (1406) 1108 210.9 3.6e-53
XP_011522356 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522357 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522360 (OMIM: 604334) PREDICTED: ubiquitin c (1031) 908 174.9 1.8e-42
XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin c ( 786) 902 173.8 3.1e-42
XP_016861124 (OMIM: 614471) PREDICTED: ubiquitin c ( 871) 881 170.0 4.6e-41
XP_005264888 (OMIM: 614471) PREDICTED: ubiquitin c (1268) 881 170.1 6.2e-41
XP_016861123 (OMIM: 614471) PREDICTED: ubiquitin c (1270) 881 170.1 6.2e-41
XP_016861122 (OMIM: 614471) PREDICTED: ubiquitin c (1281) 881 170.1 6.3e-41
XP_016861121 (OMIM: 614471) PREDICTED: ubiquitin c (1283) 881 170.1 6.3e-41
XP_016861120 (OMIM: 614471) PREDICTED: ubiquitin c (1283) 881 170.1 6.3e-41
XP_016861119 (OMIM: 614471) PREDICTED: ubiquitin c (1285) 881 170.1 6.3e-41
XP_016861118 (OMIM: 614471) PREDICTED: ubiquitin c (1303) 881 170.2 6.4e-41
XP_016861117 (OMIM: 614471) PREDICTED: ubiquitin c (1305) 881 170.2 6.4e-41
XP_016861116 (OMIM: 614471) PREDICTED: ubiquitin c (1307) 881 170.2 6.4e-41
XP_016861115 (OMIM: 614471) PREDICTED: ubiquitin c (1318) 881 170.2 6.4e-41
NP_006668 (OMIM: 614471) ubiquitin carboxyl-termin (1318) 881 170.2 6.4e-41
XP_016861114 (OMIM: 614471) PREDICTED: ubiquitin c (1320) 881 170.2 6.4e-41
>>NP_006304 (OMIM: 604731) ubiquitin carboxyl-terminal h (952 aa)
initn: 6535 init1: 6535 opt: 6535 Z-score: 6345.8 bits: 1185.6 E(85289): 0
Smith-Waterman score: 6535; 100.0% identity (100.0% similar) in 952 aa overlap (1-952:1-952)
10 20 30 40 50 60
pF1KSD MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD AYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD NPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD DGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD ECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTAL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SALSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SALSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD CLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 CLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD SLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDND
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD SENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD ALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYC
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD PNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPN
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD AGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLF
850 860 870 880 890 900
910 920 930 940 950
pF1KSD YQRQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YQRQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
910 920 930 940 950
>>XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin carbo (860 aa)
initn: 5684 init1: 4983 opt: 4983 Z-score: 4840.0 bits: 906.8 E(85289): 0
Smith-Waterman score: 5630; 96.6% identity (96.6% similar) in 860 aa overlap (122-952:1-860)
100 110 120 130 140 150
pF1KSD LPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRR
::::::::::::::::::::::::::::::
XP_016 MFVKHCKVEVYLTELKLCENGNMNNVVTRR
10 20 30
160 170 180 190 200 210
pF1KSD FSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI
40 50 60 70 80 90
220 230 240
pF1KSD EQKNEDGTWPRGPSTP-----------------------------NVKNSNYCLPSYTAY
:::::::::::::::: :::::::::::::::
XP_016 EQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNMNNRNVKNSNYCLPSYTAY
100 110 120 130 140 150
250 260 270 280 290 300
pF1KSD KNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNP
160 170 180 190 200 210
310 320 330 340 350 360
pF1KSD LGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDG
220 230 240 250 260 270
370 380 390 400 410 420
pF1KSD LHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPEC
280 290 300 310 320 330
430 440 450 460 470 480
pF1KSD AKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSA
340 350 360 370 380 390
490 500 510 520 530 540
pF1KSD LSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCL
400 410 420 430 440 450
550 560 570 580 590 600
pF1KSD REKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEGSL
460 470 480 490 500 510
610 620 630 640 650 660
pF1KSD HCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSE
520 530 540 550 560 570
670 680 690 700 710 720
pF1KSD NGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLAL
580 590 600 610 620 630
730 740 750 760 770 780
pF1KSD DWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPN
640 650 660 670 680 690
790 800 810 820 830 840
pF1KSD CKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAG
700 710 720 730 740 750
850 860 870 880 890 900
pF1KSD PCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ
760 770 780 790 800 810
910 920 930 940 950
pF1KSD RQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
820 830 840 850 860
>>XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin carbo (860 aa)
initn: 5684 init1: 4983 opt: 4983 Z-score: 4840.0 bits: 906.8 E(85289): 0
Smith-Waterman score: 5630; 96.6% identity (96.6% similar) in 860 aa overlap (122-952:1-860)
100 110 120 130 140 150
pF1KSD LPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRR
::::::::::::::::::::::::::::::
XP_016 MFVKHCKVEVYLTELKLCENGNMNNVVTRR
10 20 30
160 170 180 190 200 210
pF1KSD FSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI
40 50 60 70 80 90
220 230 240
pF1KSD EQKNEDGTWPRGPSTP-----------------------------NVKNSNYCLPSYTAY
:::::::::::::::: :::::::::::::::
XP_016 EQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNMNNRNVKNSNYCLPSYTAY
100 110 120 130 140 150
250 260 270 280 290 300
pF1KSD KNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNP
160 170 180 190 200 210
310 320 330 340 350 360
pF1KSD LGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDG
220 230 240 250 260 270
370 380 390 400 410 420
pF1KSD LHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPEC
280 290 300 310 320 330
430 440 450 460 470 480
pF1KSD AKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSA
340 350 360 370 380 390
490 500 510 520 530 540
pF1KSD LSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCL
400 410 420 430 440 450
550 560 570 580 590 600
pF1KSD REKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEGSL
460 470 480 490 500 510
610 620 630 640 650 660
pF1KSD HCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSE
520 530 540 550 560 570
670 680 690 700 710 720
pF1KSD NGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLAL
580 590 600 610 620 630
730 740 750 760 770 780
pF1KSD DWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPN
640 650 660 670 680 690
790 800 810 820 830 840
pF1KSD CKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAG
700 710 720 730 740 750
850 860 870 880 890 900
pF1KSD PCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ
760 770 780 790 800 810
910 920 930 940 950
pF1KSD RQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
820 830 840 850 860
>>NP_001239007 (OMIM: 604731) ubiquitin carboxyl-termina (981 aa)
initn: 6521 init1: 4983 opt: 4983 Z-score: 4839.2 bits: 906.8 E(85289): 0
Smith-Waterman score: 6467; 97.0% identity (97.0% similar) in 981 aa overlap (1-952:1-981)
10 20 30 40 50 60
pF1KSD MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
130 140 150 160 170 180
190 200 210 220
pF1KSD NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTP-------------
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKSPGASNFSTLPK
190 200 210 220 230 240
230 240 250 260 270
pF1KSD ----------------NVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFM
::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISPSSLSNNYNNMNNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFM
250 260 270 280 290 300
280 290 300 310 320 330
pF1KSD NSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KSD AFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAE
370 380 390 400 410 420
400 410 420 430 440 450
pF1KSD EAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYL
430 440 450 460 470 480
460 470 480 490 500 510
pF1KSD VRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENL
490 500 510 520 530 540
520 530 540 550 560 570
pF1KSD SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRN
550 560 570 580 590 600
580 590 600 610 620 630
pF1KSD NTEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDE
610 620 630 640 650 660
640 650 660 670 680 690
pF1KSD PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLG
670 680 690 700 710 720
700 710 720 730 740 750
pF1KSD NTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKP
730 740 750 760 770 780
760 770 780 790 800 810
pF1KSD PKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSY
790 800 810 820 830 840
820 830 840 850 860 870
pF1KSD SRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKD
850 860 870 880 890 900
880 890 900 910 920 930
pF1KSD DGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLE
910 920 930 940 950 960
940 950
pF1KSD SDEDSNDNDNDIENENCMHTN
:::::::::::::::::::::
NP_001 SDEDSNDNDNDIENENCMHTN
970 980
>>XP_005269318 (OMIM: 604731) PREDICTED: ubiquitin carbo (648 aa)
initn: 4438 init1: 4438 opt: 4438 Z-score: 4312.8 bits: 808.8 E(85289): 0
Smith-Waterman score: 4438; 100.0% identity (100.0% similar) in 648 aa overlap (305-952:1-648)
280 290 300 310 320 330
pF1KSD IQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFK
::::::::::::::::::::::::::::::
XP_005 MRGEIAKSYAELIKQMWSGKFSYVTPRAFK
10 20 30
340 350 360 370 380 390
pF1KSD TQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAW
40 50 60 70 80 90
400 410 420 430 440 450
pF1KSD ENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRM
100 110 120 130 140 150
460 470 480 490 500 510
pF1KSD DPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENLSSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENLSSI
160 170 180 190 200 210
520 530 540 550 560 570
pF1KSD MERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTE
220 230 240 250 260 270
580 590 600 610 620 630
pF1KSD DKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDD
280 290 300 310 320 330
640 650 660 670 680 690
pF1KSD ESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTD
340 350 360 370 380 390
700 710 720 730 740 750
pF1KSD INYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 INYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKK
400 410 420 430 440 450
760 770 780 790 800 810
pF1KSD PFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRY
460 470 480 490 500 510
820 830 840 850 860 870
pF1KSD MRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGK
520 530 540 550 560 570
880 890 900 910 920 930
pF1KSD WYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLESDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLESDE
580 590 600 610 620 630
940 950
pF1KSD DSNDNDNDIENENCMHTN
::::::::::::::::::
XP_005 DSNDNDNDIENENCMHTN
640
>>XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin carbo (775 aa)
initn: 5081 init1: 3505 opt: 3505 Z-score: 3406.0 bits: 641.3 E(85289): 5.6e-183
Smith-Waterman score: 4989; 96.0% identity (96.1% similar) in 770 aa overlap (1-741:1-770)
10 20 30 40 50 60
pF1KSD MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
130 140 150 160 170 180
190 200 210 220
pF1KSD NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTP-------------
:::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKSPGASNFSTLPK
190 200 210 220 230 240
230 240 250 260 270
pF1KSD ----------------NVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFM
::::::::::::::::::::::::::::::::::::::::::::
XP_006 ISPSSLSNNYNNMNNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFM
250 260 270 280 290 300
280 290 300 310 320 330
pF1KSD NSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KSD AFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAE
370 380 390 400 410 420
400 410 420 430 440 450
pF1KSD EAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYL
430 440 450 460 470 480
460 470 480 490 500 510
pF1KSD VRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENL
490 500 510 520 530 540
520 530 540 550 560 570
pF1KSD SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRN
550 560 570 580 590 600
580 590 600 610 620 630
pF1KSD NTEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NTEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDE
610 620 630 640 650 660
640 650 660 670 680 690
pF1KSD PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLG
670 680 690 700 710 720
700 710 720 730 740 750
pF1KSD NTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKP
:::::::::::::::::::::::::::::::::::::::::::::::: .
XP_006 NTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEKYFSLGL
730 740 750 760 770
760 770 780 790 800 810
pF1KSD PKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSY
>>NP_003354 (OMIM: 603486) ubiquitin carboxyl-terminal h (963 aa)
initn: 3610 init1: 1550 opt: 1642 Z-score: 1596.3 bits: 306.7 E(85289): 3.6e-82
Smith-Waterman score: 3644; 58.1% identity (77.1% similar) in 977 aa overlap (8-940:12-956)
10 20 30 40 50
pF1KSD MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMG
: .::.:... :..:.:..: :::.:::::::::::::::::: :..:
NP_003 MAEGGGCRERPDAETQKSELGPLMRTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD DQNVYPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARK
..:..:::::::::..: ..:.:::::::::::.:.:::.::::..:: .:::.::.::
NP_003 EHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD VVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKE
:::.:.::::::::::: :::::::.. .::.. .::::::: :::::.::.:.:: :.:
NP_003 VVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERE
130 140 150 160 170 180
180 190 200 210 220
pF1KSD TRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPR---------GPS--
:::::::::::.: :.: :.:.:::::::::::::: .:::::::: .::
NP_003 TRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEPQNEDGTWPRQTLQSKSSTAPSRN
190 200 210 220 230 240
230 240 250
pF1KSD ---TPNVKNSNYCLPSYTAYKN------------------------YDYSEPGRNNEQPG
.:. . : : : . : :. .:: .. :::
NP_003 FTTSPKSSASPYSSVSASLIANGDSTSTCGMHSSGVSRGGSGFSASYNCQEPPSSHIQPG
250 260 270 280 290 300
260 270 280 290 300 310
pF1KSD LCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIK
::::.:::::::::::.:::::: :::.:::.:.:. :.: ::::::.::::..::::::
NP_003 LCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIK
310 320 330 340 350 360
320 330 340 350 360 370
pF1KSD QMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQL
:::::. ..:.:: ::::::::::::::::::: :::::::::::::::::..::::..:
NP_003 QMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLEL
370 380 390 400 410 420
380 390 400 410 420 430
pF1KSD KDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLP
:::.:::: :::.:::::: ::::.::: ::::::::::::::::.:::::::::::::
NP_003 KDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLP
430 440 450 460 470 480
440 450 460 470 480 490
pF1KSD LPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYN
::.::.:..::.:: :: .: ::.:.:: .: . ::: ::: :::: :..:.:.:.::
NP_003 LPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIAAENMVVADVYN
490 500 510 520 530 540
500 510 520 530 540 550
pF1KSD HRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSS
::::.:: :::.:. :: ::::.:.:. . .. .: : .:: .::. . : : ..:.
NP_003 HRFHKIFQMDEGLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTS-SASA
550 560 570 580 590
560 570 580 590 600 610
pF1KSD LFGQPFLMAVPRNN-TEDKLYNLLLLRMCRYVKISTETEETEGSLH--CCKDQNINGNGP
:.:::.:..::... : ..::. . :. :::: : . :. : : . :.
NP_003 LYGQPLLLSVPKHKLTLESLYQAVCDRISRYVKQPLPDEFGSSPLEPGAC---NGSRNSC
600 610 620 630 640 650
620 630 640 650 660 670
pF1KSD NGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQL
.: :: ::: .: . .: ::.:.: .:: :.: ::. :. :::
NP_003 EGEDEE----EMEHQE------EGKEQLSETEGS-GEDEPGND-PSET---TQKKIKGQP
660 670 680 690 700
680 690 700 710 720 730
pF1KSD TGHKKRLFTFQF-NNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFD
::::::.. :. :..::: . : . :.:. :: ::.::: . .. :.:
NP_003 C--PKRLFTFSLVNSYGTADINSLAAD-------GKLLKLNSRSTLAMDWDSETRRLYYD
710 720 730 740 750
740 750 760 770 780 790
pF1KSD ENAAEDFEKHESV-EYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKL
:. .: .::: :. . . :: : :.:::::::: : :: .:::::::::.:::::::.
NP_003 EQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKF
760 770 780 790 800 810
800 810 820 830 840 850
pF1KSD DLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSN
:::::: .::::::::::.:: ::::::.:.::: :.::::. : .: : :.::::::
NP_003 DLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSN
820 830 840 850 860 870
860 870 880 890 900 910
pF1KSD HYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFF
:::.:: :::::.:::: .:::::::::.:: :::::::.::::::::::.: :.
NP_003 HYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD----EFY
880 890 900 910 920
920 930 940 950
pF1KSD PLDRETKGASAATGI-PLESDEDSNDNDNDIENENCMHTN
....:. : : :.. .:..
NP_003 KTPSLSSSGSSDGGTRPSSSQQGFGDDEACSMDTN
930 940 950 960
>>NP_955475 (OMIM: 603486) ubiquitin carboxyl-terminal h (916 aa)
initn: 3610 init1: 1550 opt: 1639 Z-score: 1593.7 bits: 306.2 E(85289): 5e-82
Smith-Waterman score: 3698; 59.8% identity (79.6% similar) in 950 aa overlap (1-940:1-909)
10 20 30 40 50
pF1KSD MAEGGAA----DLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMG
:::::. : .::.:... :..:.:..: :::.:::::::::::::::::: :..:
NP_955 MAEGGGCRERPDAETQKSELGPLMRTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD DQNVYPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARK
..:..:::::::::..: ..:.:::::::::::.:.:::.::::..:: .:::.::.::
NP_955 EHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD VVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKE
:::.:.::::::::::: :::::::.. .::.. .::::::: :::::.::.:.:: :.:
NP_955 VVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERE
130 140 150 160 170 180
180 190 200 210 220 230
pF1KSD TRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCL
:::::::::::.: :.: :.:.:::::::::::::: .:::::::: .: . ..:..
NP_955 TRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEPQNEDGTWPR--QTLQSNGSGFS-
190 200 210 220 230
240 250 260 270 280 290
pF1KSD PSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEE
.:. .:: .. :::::::.:::::::::::.:::::: :::.:::.:.:. :
NP_955 ------ASYNCQEPPSSHIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KSD LNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELL
.: ::::::.::::..:::::::::::. ..:.:: ::::::::::::::::::: ::::
NP_955 INRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELL
300 310 320 330 340 350
360 370 380 390 400 410
pF1KSD AFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKST
:::::::::::::..::::..::::.:::: :::.:::::: ::::.::: ::::::::
NP_955 AFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKST
360 370 380 390 400 410
420 430 440 450 460 470
pF1KSD LVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDL
::::::::.:::::::::::::::.::.:..::.:: :: .: ::.:.:: .: . ::
NP_955 LVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDL
420 430 440 450 460 470
480 490 500 510 520 530
pF1KSD CTALSALSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHV
: ::: :::: :..:.:.:.::::::.:: :::.:. :: ::::.:.:. . .. .: :
NP_955 CEALSRLSGIAAENMVVADVYNHRFHKIFQMDEGLNHIMPRDDIFVYEVCSTSVDGSECV
480 490 500 510 520 530
540 550 560 570 580 590
pF1KSD IIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNN-TEDKLYNLLLLRMCRYVKISTET
.:: .::. . : : ..:.:.:::.:..::... : ..::. . :. ::::
NP_955 TLPVYFRERKSRPSSTS-SASALYGQPLLLSVPKHKLTLESLYQAVCDRISRYVKQPLPD
540 550 560 570 580 590
600 610 620 630 640 650
pF1KSD EETEGSLH--CCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSED
: . :. : : . :. .: :: ::: .: . .: ::.:.: .::
NP_955 EFGSSPLEPGAC---NGSRNSCEGEDEE----EMEHQE------EGKEQLSETEGS-GED
600 610 620 630
660 670 680 690 700 710
pF1KSD SVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQF-NNLGNTDINYIKDDTRHIRFDDRQL
:.: ::. :. ::: ::::::.. :. :..::: . : . :
NP_955 EPGND-PSET---TQKKIKGQ--PCPKRLFTFSLVNSYGTADINSLAAD-------GKLL
640 650 660 670 680
720 730 740 750 760 770
pF1KSD RLDERSFLALDWDPDLKKRYFDENAAEDFEKHESV-EYKPPKKPFVKLKDCIELFTTKEK
.:. :: ::.::: . .. :.::. .: .::: :. . . :: : :.:::::::: :
NP_955 KLNSRSTLAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTMET
690 700 710 720 730 740
780 790 800 810 820 830
pF1KSD LGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLD
:: .:::::::::.:::::::.:::::: .::::::::::.:: ::::::.:.::: :.
NP_955 LGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLN
750 760 770 780 790 800
840 850 860 870 880 890
pF1KSD MSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQI
::::. : .: : :.:::::::::.:: :::::.:::: .:::::::::.:: ::::::
NP_955 MSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQI
810 820 830 840 850 860
900 910 920 930 940 950
pF1KSD VSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGI-PLESDEDSNDNDNDIENENCMH
:.::::::::::.: :. ....:. : : :.. .:..
NP_955 VTKAAYVLFYQRRDD----EFYKTPSLSSSGSSDGGTRPSSSQQGFGDDEACSMDTN
870 880 890 900 910
pF1KSD TN
>>NP_001239008 (OMIM: 604731) ubiquitin carboxyl-termina (235 aa)
initn: 1552 init1: 1552 opt: 1554 Z-score: 1519.7 bits: 290.6 E(85289): 6.5e-78
Smith-Waterman score: 1554; 97.0% identity (97.9% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KSD MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYT
:::::::::::::::::::::::::::::::::::::::::::::::. . :
NP_001 NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKKPLEQSC
190 200 210 220 230
250 260 270 280 290 300
pF1KSD AYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFD
>>XP_005272731 (OMIM: 300050) PREDICTED: ubiquitin carbo (690 aa)
initn: 2176 init1: 1308 opt: 1461 Z-score: 1422.7 bits: 274.1 E(85289): 1.7e-72
Smith-Waterman score: 2300; 49.6% identity (72.3% similar) in 736 aa overlap (211-933:1-685)
190 200 210 220 230 240
pF1KSD NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYT
.: ...::::: . .: :.:.
XP_005 METRKKDGTWP--SAQLHVMNNNM------
10 20
250 260 270 280 290 300
pF1KSD AYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFD
. .. :.. : :::.:::.:::::::::::.:::::.: :::::::. : :::::
XP_005 SEEDEDFK--G----QPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFR
30 40 50 60 70
310 320 330 340 350 360
pF1KSD NPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLL
:::::.::::..::.:.:: :::. ..:..::..::.:: :: ::::.: ::::.:::
XP_005 NPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGYQQHDSQELLSFLL
80 90 100 110 120 130
370 380 390 400 410 420
pF1KSD DGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCP
:::::::::..:: :..: :: ::::. ::.:::.:: .::::.::: ::::::::::::
XP_005 DGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCP
140 150 160 170 180 190
430 440 450 460 470 480
pF1KSD ECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTAL
.:...::::::::::..:::....:.:::... ::: :: :...:::: :.: :::.::
XP_005 DCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVAL
200 210 220 230 240 250
490 500 510 520 530
pF1KSD SALSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEIN--INRTEDT-EHVI
: .:: ..:.:.:...:::.... ..: ::::..::::.:.:.. :. : . : ..
XP_005 SKHTGISPERMMVADVFSHRFYKLYQLEEPLSSILDRDDIFVYEVSGRIEAIEGSREDIV
260 270 280 290 300 310
540 550 560 570 580 590
pF1KSD IPVCLREKFRHSSYTH-HTGSSLFGQPFLMAVPRNN-TEDKLYNLLLLRMCRYVKISTET
.:: :::. .:.. . : :::.:.:..:::. : . :::.:. :. ::: .
XP_005 VPVYLRERTPARDYNNSYYGLMLFGHPLLVSVPRDRFTWEGLYNVLMYRLSRYVTKPNSD
320 330 340 350 360 370
600 610 620 630 640 650
pF1KSD EETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSV
.: .:. :. . : . : : .. . . : : :. :
XP_005 DEDDGD------------------EKEDDEEDKDDVPGPSTGGSLRDP---EPEQAGPSS
380 390 400 410
660 670 680 690 700 710
pF1KSD GGDNDSENGLCTEDTCKG--QLTGHKKR--LFTFQFNNLGNTDINYIKDDTRHIRFDDRQ
: : : :.: : : ...: :::.: : ..:. . . : .
XP_005 GVTNRCPFLL---DNCLGTSQWPPRRRRKQLFTLQTVNSNGTSDRTTSPEEVHAQ-----
420 430 440 450 460
720 730 740 750 760 770
pF1KSD LRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEK
..:.::.:..::::.:: :: . ::. : : : : :.:..::::::: :
XP_005 ------PYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKAP-VRLQECIELFTTVET
470 480 490 500 510 520
780 790 800 810 820 830
pF1KSD LGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLD
: :.:::::.::.:: :::::::: :: .:..:::::::... :.::::::.::: :::
XP_005 LEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRDLD
530 540 550 560 570 580
840 850 860 870 880
pF1KSD MSEFLINPN--AGPC--RYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTAS
.:::.:.:. ..: .:.::::::::::: ::::.:: :::.:.:.::::.::: ..
XP_005 FSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVN
590 600 610 620 630 640
890 900 910 920 930 940
pF1KSD EDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENEN
:.:: :::::::::::::. . . : :: : . : :.
XP_005 ENQIESKAAYVLFYQRQDV-ARRLLSPAGSSGAPASPACSSPPSSEFMDVN
650 660 670 680 690
950
pF1KSD CMHTN
952 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:58:00 2016 done: Thu Nov 3 01:58:02 2016
Total Scan time: 9.140 Total Display time: 0.290
Function used was FASTA [36.3.4 Apr, 2011]