Result of FASTA (omim) for
pF1KSDA0544
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0544, 552 aa
1>>>pF1KSDA0544 552 - 552 aa - 552 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1566+/-0.000386; mu= 6.2178+/- 0.024
mean_var=197.2630+/-40.129, 0's: 0 Z-trim(118.8): 74 B-trim: 0 in 0/55
Lambda= 0.091317
statistics sampled from 31980 (32056) to 31980 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.376), width: 16
Scan time: 9.930
The best scores are: opt bits E(85289)
NP_001135762 (OMIM: 607559) E3 ubiquitin-protein l ( 552) 3718 502.7 1.2e-141
XP_005255277 (OMIM: 607559) PREDICTED: E3 ubiquiti ( 552) 3718 502.7 1.2e-141
XP_016878580 (OMIM: 607559) PREDICTED: E3 ubiquiti ( 553) 3706 501.1 3.7e-141
XP_005255276 (OMIM: 607559) PREDICTED: E3 ubiquiti ( 553) 3706 501.1 3.7e-141
NP_056061 (OMIM: 607559) E3 ubiquitin-protein liga ( 576) 3627 490.7 5.2e-138
XP_005255274 (OMIM: 607559) PREDICTED: E3 ubiquiti ( 577) 3615 489.1 1.6e-137
XP_016878582 (OMIM: 607559) PREDICTED: E3 ubiquiti ( 514) 3464 469.2 1.4e-131
XP_011520743 (OMIM: 607559) PREDICTED: E3 ubiquiti ( 539) 3361 455.6 1.8e-127
NP_001135763 (OMIM: 607559) E3 ubiquitin-protein l ( 530) 2462 337.2 7.8e-92
XP_005255278 (OMIM: 607559) PREDICTED: E3 ubiquiti ( 530) 2462 337.2 7.8e-92
XP_016878581 (OMIM: 607559) PREDICTED: E3 ubiquiti ( 531) 2450 335.6 2.3e-91
NP_001135761 (OMIM: 607559) E3 ubiquitin-protein l ( 554) 2442 334.6 5e-91
XP_005255275 (OMIM: 607559) PREDICTED: E3 ubiquiti ( 555) 2430 333.0 1.5e-90
XP_011520744 (OMIM: 607559) PREDICTED: E3 ubiquiti ( 339) 1865 258.4 2.7e-68
>>NP_001135762 (OMIM: 607559) E3 ubiquitin-protein ligas (552 aa)
initn: 3718 init1: 3718 opt: 3718 Z-score: 2663.7 bits: 502.7 E(85289): 1.2e-141
Smith-Waterman score: 3718; 100.0% identity (100.0% similar) in 552 aa overlap (1-552:1-552)
10 20 30 40 50 60
pF1KSD MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD DGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPA
490 500 510 520 530 540
550
pF1KSD LGPDSCSVGIDE
::::::::::::
NP_001 LGPDSCSVGIDE
550
>>XP_005255277 (OMIM: 607559) PREDICTED: E3 ubiquitin-pr (552 aa)
initn: 3718 init1: 3718 opt: 3718 Z-score: 2663.7 bits: 502.7 E(85289): 1.2e-141
Smith-Waterman score: 3718; 100.0% identity (100.0% similar) in 552 aa overlap (1-552:1-552)
10 20 30 40 50 60
pF1KSD MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD DGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPA
490 500 510 520 530 540
550
pF1KSD LGPDSCSVGIDE
::::::::::::
XP_005 LGPDSCSVGIDE
550
>>XP_016878580 (OMIM: 607559) PREDICTED: E3 ubiquitin-pr (553 aa)
initn: 2306 init1: 2306 opt: 3706 Z-score: 2655.2 bits: 501.1 E(85289): 3.7e-141
Smith-Waterman score: 3706; 99.8% identity (99.8% similar) in 553 aa overlap (1-552:1-553)
10 20 30 40 50 60
pF1KSD MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
130 140 150 160 170 180
190 200 210 220 230
pF1KSD SEWKDDELNFDLDRGVFPVVIQAVVDEGD-VVEVTGHAHVLLAAFEKHMDGSFSVKPLKQ
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 SEWKDDELNFDLDRGVFPVVIQAVVDEGDAVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KSD KQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KSD TSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFK
310 320 330 340 350 360
360 370 380 390 400 410
pF1KSD KSKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGI
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD SDGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPP
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD LGGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLP
490 500 510 520 530 540
540 550
pF1KSD ALGPDSCSVGIDE
:::::::::::::
XP_016 ALGPDSCSVGIDE
550
>>XP_005255276 (OMIM: 607559) PREDICTED: E3 ubiquitin-pr (553 aa)
initn: 2306 init1: 2306 opt: 3706 Z-score: 2655.2 bits: 501.1 E(85289): 3.7e-141
Smith-Waterman score: 3706; 99.8% identity (99.8% similar) in 553 aa overlap (1-552:1-553)
10 20 30 40 50 60
pF1KSD MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
130 140 150 160 170 180
190 200 210 220 230
pF1KSD SEWKDDELNFDLDRGVFPVVIQAVVDEGD-VVEVTGHAHVLLAAFEKHMDGSFSVKPLKQ
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_005 SEWKDDELNFDLDRGVFPVVIQAVVDEGDAVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KSD KQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KSD TSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFK
310 320 330 340 350 360
360 370 380 390 400 410
pF1KSD KSKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KSKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGI
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD SDGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPP
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD LGGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLP
490 500 510 520 530 540
540 550
pF1KSD ALGPDSCSVGIDE
:::::::::::::
XP_005 ALGPDSCSVGIDE
550
>>NP_056061 (OMIM: 607559) E3 ubiquitin-protein ligase M (576 aa)
initn: 3627 init1: 3627 opt: 3627 Z-score: 2598.7 bits: 490.7 E(85289): 5.2e-138
Smith-Waterman score: 3627; 100.0% identity (100.0% similar) in 539 aa overlap (1-539:1-539)
10 20 30 40 50 60
pF1KSD MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD DGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPG
490 500 510 520 530 540
550
pF1KSD LGPDSCSVGIDE
NP_056 RPTSMETAHGLATTSPTWPPLGGPSPDPSAAELTPL
550 560 570
>>XP_005255274 (OMIM: 607559) PREDICTED: E3 ubiquitin-pr (577 aa)
initn: 2215 init1: 2215 opt: 3615 Z-score: 2590.1 bits: 489.1 E(85289): 1.6e-137
Smith-Waterman score: 3615; 99.8% identity (99.8% similar) in 540 aa overlap (1-539:1-540)
10 20 30 40 50 60
pF1KSD MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
130 140 150 160 170 180
190 200 210 220 230
pF1KSD SEWKDDELNFDLDRGVFPVVIQAVVDEGD-VVEVTGHAHVLLAAFEKHMDGSFSVKPLKQ
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_005 SEWKDDELNFDLDRGVFPVVIQAVVDEGDAVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KSD KQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KSD TSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFK
310 320 330 340 350 360
360 370 380 390 400 410
pF1KSD KSKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KSKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGI
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD SDGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPP
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD LGGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLP
490 500 510 520 530 540
540 550
pF1KSD ALGPDSCSVGIDE
XP_005 GRPTSMETAHGLATTSPTWPPLGGPSPDPSAAELTPL
550 560 570
>>XP_016878582 (OMIM: 607559) PREDICTED: E3 ubiquitin-pr (514 aa)
initn: 3464 init1: 3464 opt: 3464 Z-score: 2483.3 bits: 469.2 E(85289): 1.4e-131
Smith-Waterman score: 3464; 100.0% identity (100.0% similar) in 514 aa overlap (39-552:1-514)
10 20 30 40 50 60
pF1KSD IAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDLNFLGSRPV
::::::::::::::::::::::::::::::
XP_016 MGGEKFDTPHPEGYLFGENMDLNFLGSRPV
10 20 30
70 80 90 100 110 120
pF1KSD QFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADA
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD RVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDFSEWKDDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDFSEWKDDEL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KSD NFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVSY
160 170 180 190 200 210
250 260 270 280 290 300
pF1KSD LLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRY
220 230 240 250 260 270
310 320 330 340 350 360
pF1KSD QANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKKSKPHPASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKKSKPHPASL
280 290 300 310 320 330
370 380 390 400 410 420
pF1KSD ASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGISDGLSQASC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGISDGLSQASC
340 350 360 370 380 390
430 440 450 460 470 480
pF1KSD PLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPLGGAELALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPLGGAELALR
400 410 420 430 440 450
490 500 510 520 530 540
pF1KSD ESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPALGPDSCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPALGPDSCSV
460 470 480 490 500 510
550
pF1KSD GIDE
::::
XP_016 GIDE
>>XP_011520743 (OMIM: 607559) PREDICTED: E3 ubiquitin-pr (539 aa)
initn: 2215 init1: 2215 opt: 3361 Z-score: 2409.7 bits: 455.6 E(85289): 1.8e-127
Smith-Waterman score: 3361; 99.8% identity (99.8% similar) in 502 aa overlap (39-539:1-502)
10 20 30 40 50 60
pF1KSD IAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDLNFLGSRPV
::::::::::::::::::::::::::::::
XP_011 MGGEKFDTPHPEGYLFGENMDLNFLGSRPV
10 20 30
70 80 90 100 110 120
pF1KSD QFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADA
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD RVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDFSEWKDDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDFSEWKDDEL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KSD NFDLDRGVFPVVIQAVVDEGD-VVEVTGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVS
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
XP_011 NFDLDRGVFPVVIQAVVDEGDAVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KSD YLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLR
220 230 240 250 260 270
310 320 330 340 350 360
pF1KSD YQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKKSKPHPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKKSKPHPAS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KSD LASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGISDGLSQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGISDGLSQAS
340 350 360 370 380 390
430 440 450 460 470 480
pF1KSD CPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPLGGAELAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPLGGAELAL
400 410 420 430 440 450
490 500 510 520 530 540
pF1KSD RESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPALGPDSCS
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPGRPTSMET
460 470 480 490 500 510
550
pF1KSD VGIDE
XP_011 AHGLATTSPTWPPLGGPSPDPSAAELTPL
520 530
>>NP_001135763 (OMIM: 607559) E3 ubiquitin-protein ligas (530 aa)
initn: 2401 init1: 2401 opt: 2462 Z-score: 1769.7 bits: 337.2 E(85289): 7.8e-92
Smith-Waterman score: 3509; 96.0% identity (96.0% similar) in 552 aa overlap (1-552:1-530)
10 20 30 40 50 60
pF1KSD MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHS-----
310 320 330 340 350
370 380 390 400 410 420
pF1KSD SKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
:::::::::::::::::::::::::::::::::::::::::::
NP_001 -----------------NSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
360 370 380 390
430 440 450 460 470 480
pF1KSD DGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPL
400 410 420 430 440 450
490 500 510 520 530 540
pF1KSD GGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPA
460 470 480 490 500 510
550
pF1KSD LGPDSCSVGIDE
::::::::::::
NP_001 LGPDSCSVGIDE
520 530
>>XP_005255278 (OMIM: 607559) PREDICTED: E3 ubiquitin-pr (530 aa)
initn: 2401 init1: 2401 opt: 2462 Z-score: 1769.7 bits: 337.2 E(85289): 7.8e-92
Smith-Waterman score: 3509; 96.0% identity (96.0% similar) in 552 aa overlap (1-552:1-530)
10 20 30 40 50 60
pF1KSD MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHSCPFKK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSLEHDEHS-----
310 320 330 340 350
370 380 390 400 410 420
pF1KSD SKPHPASLASKKPKRETNSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
:::::::::::::::::::::::::::::::::::::::::::
XP_005 -----------------NSDSVPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
360 370 380 390
430 440 450 460 470 480
pF1KSD DGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DGLSQASCPLAAIDHILDSSRQKGRPQSKAPDSTLRSPSSPIHEEDEEKLSEDVDAPPPL
400 410 420 430 440 450
490 500 510 520 530 540
pF1KSD GGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGAELALRESSSPESFITEEVDESSSPQQGTRAASIENVLQDSSPEHCGRGPPADIYLPA
460 470 480 490 500 510
550
pF1KSD LGPDSCSVGIDE
::::::::::::
XP_005 LGPDSCSVGIDE
520 530
552 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:01:18 2016 done: Thu Nov 3 02:01:19 2016
Total Scan time: 9.930 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]