Result of FASTA (ccds) for
pF1KSDA0573
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0573, 406 aa
1>>>pF1KSDA0573 406 - 406 aa - 406 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5411+/-0.000831; mu= 16.1736+/- 0.050
mean_var=68.2532+/-13.510, 0's: 0 Z-trim(106.9): 42 B-trim: 0 in 0/52
Lambda= 0.155243
statistics sampled from 9191 (9231) to 9191 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.284), width: 16
Scan time: 2.290
The best scores are: opt bits E(32554)
CCDS35082.1 ERP44 gene_id:23071|Hs108|chr9 ( 406) 2753 625.5 2.7e-179
CCDS5893.1 PDIA4 gene_id:9601|Hs108|chr7 ( 645) 373 92.5 1.2e-18
CCDS11787.1 P4HB gene_id:5034|Hs108|chr17 ( 508) 329 82.6 8.9e-16
>>CCDS35082.1 ERP44 gene_id:23071|Hs108|chr9 (406 aa)
initn: 2753 init1: 2753 opt: 2753 Z-score: 3332.3 bits: 625.5 E(32554): 2.7e-179
Smith-Waterman score: 2753; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)
10 20 30 40 50 60
pF1KSD MHPAVFLSLPDLRCSLLLLVTWVFTPVTTEITSLDTENIDEILNNADVALVNFYADWCRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MHPAVFLSLPDLRCSLLLLVTWVFTPVTTEITSLDTENIDEILNNADVALVNFYADWCRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD REYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 REYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 CVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHAD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD CDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 CDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREF
310 320 330 340 350 360
370 380 390 400
pF1KSD HHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 HHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL
370 380 390 400
>>CCDS5893.1 PDIA4 gene_id:9601|Hs108|chr7 (645 aa)
initn: 262 init1: 122 opt: 373 Z-score: 448.3 bits: 92.5 E(32554): 1.2e-18
Smith-Waterman score: 373; 24.5% identity (58.4% similar) in 363 aa overlap (22-368:172-522)
10 20 30 40 50
pF1KSD MHPAVFLSLPDLRCSLLLLVTWVFTPVTTEITSLDTENIDEILNNADVALV
:. : .: . : ::.::..:.::. ::
CCDS58 ILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLV--LTKENFDEVVNDADIILV
150 160 170 180 190
60 70 80 90 100 110
pF1KSD NFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLK
.::: :: . : : .:.:. .... : . .:.:: ..:.:.:. .: :::::
CCDS58 EFYAPWCGHCKKLAPEYEKAAKELSKRSP---PIPLAKVDATAETDLAKRFDVSGYPTLK
200 210 220 230 240 250
120 130 140 150 160
pF1KSD LFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTL--DRSKRNIIGYFEQ
.::.: .: : : ...::. .:.. : .:: : .. . : . ::: :.
CCDS58 IFRKGR--PYDYNGPREKYGIVDYMIEQSGPPSKEILTLKQVQEFLKDGDDVIIIGVFKG
260 270 280 290 300 310
170 180 190 200 210 220
pF1KSD KDSDNYRVFERVANILHDDCAFLSAFG-DVSKPERYS-GDNIIYKPPGHSA---P--DMV
... :. .. .:: :..: : .:. ...: . : :. ....: .. : :.
CCDS58 ESDPAYQQYQDAANNLREDYKFHHTFSTEIAKFLKVSQGQLVVMQPEKFQSKYEPRSHMM
320 330 340 350 360 370
230 240 250 260 270
pF1KSD YLGAMTNFDVTYNWIQDKCVPLV--REITFENGEELTEEGLPFLILFHMKE---DTESLE
. . :. .. ... .::: :... ..... :.. :...... . : ..
CCDS58 DVQGSTQDSAIKDFVLKYALPLVGHRKVS-NDAKRYTRR--PLVVVYYSVDFSFDYRAAT
380 390 400 410 420 430
280 290 300 310 320 330
pF1KSD IFQNEVARQLISEKGTINFLHADCDKFRHPL--LHIQKTPADCPVIAIDSFRHMYVFGDF
: . .. .. .: :: . . . : .... : . .: . ...
CCDS58 QFWRSKVLEVAKDFPEYTFAIADEEDYAGEVKDLGLSESGEDVNAAILDESGKKFAME--
440 450 460 470 480
340 350 360 370 380 390
pF1KSD KDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEY
. . :..:: ...:::. .. : : .
CCDS58 PEEFDSDTLREFVTAFKKGKLKPVIKSQPVPKNNKGPVKVVVGKTFDSIVMDPKKDVLIE
490 500 510 520 530 540
400
pF1KSD RYTLLRDRDEL
CCDS58 FYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVPSDRYKVEGFPTIYFAPSG
550 560 570 580 590 600
>>CCDS11787.1 P4HB gene_id:5034|Hs108|chr17 (508 aa)
initn: 190 init1: 122 opt: 329 Z-score: 396.7 bits: 82.6 E(32554): 8.9e-16
Smith-Waterman score: 340; 23.6% identity (54.9% similar) in 377 aa overlap (31-392:26-395)
10 20 30 40 50 60
pF1KSD MHPAVFLSLPDLRCSLLLLVTWVFTPVTTEITSLDTENIDEILNNADVALVNFYADWCRF
. : :. : : ::.::: ::
CCDS11 MLRRALLCLAVAALVRADAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGH
10 20 30 40 50
70 80 90 100 110
pF1KSD SQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNG-MMM
. : : . .:. .: : ... .:.:: ..::.::.: . :::.:.::::
CCDS11 CKALAPEYAKAAGKLKAE---GSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTAS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KSD KREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTL-DRSKRNIIGYFEQKDSDNYRVF
.:: . : . ........ . . : : .: . :. .::.:.. .::. . :
CCDS11 PKEYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD ERVANILHDDCAF-LSAFGDVSKPERYSGDNII-YKPPGHSAPDMVYLGAMTNFDVTYNW
..:. . :: : ... .:: . . . :... .: .. . . : .:. .. ..
CCDS11 LQAAEAI-DDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNN--FEGEVTKENLL-DF
180 190 200 210 220
240 250 260 270 280 290
pF1KSD IQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINF
:. . .::: :.: ... .. . ::. . ... . . .. : :: : :
CCDS11 IKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILF
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD LHADCDKFRHP--LLHIQKTPADCPVIAIDSFRH-MYVFGDFKDVLIPGKLKQFVFDLHS
. : :. . : . .::.. . .... : . .. : .. .: .
CCDS11 IFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLE
290 300 310 320 330 340
360 370 380 390 400
pF1KSD GKL--HREFHHGPDPTDTAP-----GEQAQDVASSPPESSFQKL-APSEYRYTLLRDRDE
::. : .. :. : : :.. .::: . .. : .. ::
CCDS11 GKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWD
350 360 370 380 390 400
pF1KSD L
CCDS11 KLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKK
410 420 430 440 450 460
406 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:07:46 2016 done: Thu Nov 3 02:07:46 2016
Total Scan time: 2.290 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]