Result of FASTA (ccds) for
pF1KSDA0601
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0601, 852 aa
1>>>pF1KSDA0601 852 - 852 aa - 852 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8947+/-0.000934; mu= 3.4055+/- 0.057
mean_var=297.2515+/-60.176, 0's: 0 Z-trim(115.1): 15 B-trim: 0 in 0/55
Lambda= 0.074390
statistics sampled from 15688 (15702) to 15688 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.482), width: 16
Scan time: 3.830
The best scores are: opt bits E(32554)
CCDS30627.1 KDM1A gene_id:23028|Hs108|chr1 ( 852) 5645 619.7 6.9e-177
CCDS53278.1 KDM1A gene_id:23028|Hs108|chr1 ( 876) 4572 504.5 3.3e-142
CCDS34343.1 KDM1B gene_id:221656|Hs108|chr6 ( 590) 543 72.0 3.6e-12
>>CCDS30627.1 KDM1A gene_id:23028|Hs108|chr1 (852 aa)
initn: 5645 init1: 5645 opt: 5645 Z-score: 3289.2 bits: 619.7 E(32554): 6.9e-177
Smith-Waterman score: 5645; 100.0% identity (100.0% similar) in 852 aa overlap (1-852:1-852)
10 20 30 40 50 60
pF1KSD MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD KSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFAN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD EVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPI
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD TPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPRQA
790 800 810 820 830 840
850
pF1KSD TPGVPAQQSPSM
::::::::::::
CCDS30 TPGVPAQQSPSM
850
>>CCDS53278.1 KDM1A gene_id:23028|Hs108|chr1 (876 aa)
initn: 4500 init1: 3220 opt: 4572 Z-score: 2666.6 bits: 504.5 E(32554): 3.3e-142
Smith-Waterman score: 5577; 97.3% identity (97.3% similar) in 876 aa overlap (1-852:1-876)
10 20 30 40 50 60
pF1KSD MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY
70 80 90 100 110 120
130 140 150 160 170
pF1KSD REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG-------
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQD
130 140 150 160 170 180
180 190 200 210 220
pF1KSD -------------VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQL
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DSSGGYGDGQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD WLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGK
250 260 270 280 290 300
290 300 310 320 330 340
pF1KSD VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN
310 320 330 340 350 360
350 360 370 380 390
pF1KSD PMAVVSKQVNMELAKIKQKCPLYEANGQA----VPKEKDEMVEQEFNRLLEATSYLSHQL
::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
CCDS53 PMAVVSKQVNMELAKIKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KSD DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIK
430 440 450 460 470 480
460 470 480 490 500 510
pF1KSD ELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPP
490 500 510 520 530 540
520 530 540 550 560 570
pF1KSD SDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPV
550 560 570 580 590 600
580 590 600 610 620 630
pF1KSD ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA
610 620 630 640 650 660
640 650 660 670 680 690
pF1KSD VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN
670 680 690 700 710 720
700 710 720 730 740 750
pF1KSD LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPW
730 740 750 760 770 780
760 770 780 790 800 810
pF1KSD ARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALL
790 800 810 820 830 840
820 830 840 850
pF1KSD SGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM
::::::::::::::::::::::::::::::::::::
CCDS53 SGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM
850 860 870
>>CCDS34343.1 KDM1B gene_id:221656|Hs108|chr6 (590 aa)
initn: 685 init1: 215 opt: 543 Z-score: 332.0 bits: 72.0 E(32554): 3.6e-12
Smith-Waterman score: 633; 38.3% identity (68.3% similar) in 287 aa overlap (547-826:322-588)
520 530 540 550 560 570
pF1KSD SDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDF-EFTGSHLTVRNGYSCVP
.: . ::... : .:.:.: . ::: .
CCDS34 DKSFKGVTVGRGAQIVNGCINNPVALMCEQVSARSWDHNEFFAQFAGDHTLLTPGYSVII
300 310 320 330 340 350
580 590 600 610 620 630
pF1KSD VALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPP
:::::::.:.. :. . : :: :: ...: .:. :. . :: :.::..: :
CCDS34 EKLAEGLDIQLKSPVQCIDY--SGDEVQVTTTDGTG----YSAQKVLVTVPLALL--QKG
360 370 380 390 400
640 650 660 670 680 690
pF1KSD AVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSV---NLFGHVGSTTASRGELF
:.:: ::: : : .:.. .: : ..:..: : ::: .: ..:::: ....:: .
CCDS34 AIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFA
410 420 430 440 450 460
700 710 720 730 740
pF1KSD LFWNL---YKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVS
.:... : .:....::::.. .....: .. .:.: :. .: . ::.: . :.
CCDS34 VFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVT
470 480 490 500 510 520
750 760 770 780 790 800
pF1KSD RWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPA
:: .::: . .::.: .:.::. ::..:. .: :. .::::: : :..:
CCDS34 RWSTDPWIQMAYSFVKTGGSGEAYDIIAE------DIQGT------VFFAGEATNRHFPQ
530 540 550 560 570
810 820 830 840 850
pF1KSD TVHGALLSGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM
:: :: :::.:::..::
CCDS34 TVTGAYLSGVREASKIAAF
580 590
852 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:14:39 2016 done: Thu Nov 3 02:14:40 2016
Total Scan time: 3.830 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]