Result of FASTA (ccds) for
pF1KSDA0632
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0632, 700 aa
1>>>pF1KSDA0632 700 - 700 aa - 700 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5934+/-0.000801; mu= 9.5333+/- 0.049
mean_var=122.1466+/-24.257, 0's: 0 Z-trim(111.1): 9 B-trim: 0 in 0/54
Lambda= 0.116047
statistics sampled from 12082 (12085) to 12082 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.371), width: 16
Scan time: 3.810
The best scores are: opt bits E(32554)
CCDS34691.1 PTCD1 gene_id:26024|Hs108|chr7 ( 700) 4672 793.4 0
CCDS56496.1 PTCD1 gene_id:100526740|Hs108|chr7 ( 749) 4672 793.4 0
>>CCDS34691.1 PTCD1 gene_id:26024|Hs108|chr7 (700 aa)
initn: 4672 init1: 4672 opt: 4672 Z-score: 4231.4 bits: 793.4 E(32554): 0
Smith-Waterman score: 4672; 100.0% identity (100.0% similar) in 700 aa overlap (1-700:1-700)
10 20 30 40 50 60
pF1KSD MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWAPFSSSSSQLPLGQERQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWAPFSSSSSQLPLGQERQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD ENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHNLRFGERRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHNLRFGERRDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD QMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD QRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD HRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LNYTYLISILKDMKQNRVPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LNYTYLISILKDMKQNRVPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQ
610 620 630 640 650 660
670 680 690 700
pF1KSD WLTVMPAEETPHPWQKFRTKPQGDQDTGKEADDGCALGGR
::::::::::::::::::::::::::::::::::::::::
CCDS34 WLTVMPAEETPHPWQKFRTKPQGDQDTGKEADDGCALGGR
670 680 690 700
>>CCDS56496.1 PTCD1 gene_id:100526740|Hs108|chr7 (749 aa)
initn: 4672 init1: 4672 opt: 4672 Z-score: 4230.9 bits: 793.4 E(32554): 0
Smith-Waterman score: 4672; 100.0% identity (100.0% similar) in 700 aa overlap (1-700:50-749)
10 20 30
pF1KSD MDFVRLARLFARARPMGLFILQHLDPCRAR
::::::::::::::::::::::::::::::
CCDS56 LPSWILMRDFSPSGIFGAFQRGPGGTGKPEMDFVRLARLFARARPMGLFILQHLDPCRAR
20 30 40 50 60 70
40 50 60 70 80 90
pF1KSD WAGGREGLMRPMWAPFSSSSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEEEESFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WAGGREGLMRPMWAPFSSSSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEEEESFG
80 90 100 110 120 130
100 110 120 130 140 150
pF1KSD TLSDKYSSRRLFRKSAAQFHNLRFGERRDEQMEPEPKLWRGRRNTPYWYFLQCKHLIKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TLSDKYSSRRLFRKSAAQFHNLRFGERRDEQMEPEPKLWRGRRNTPYWYFLQCKHLIKEG
140 150 160 170 180 190
160 170 180 190 200 210
pF1KSD KLVEALDLFERQMLKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KLVEALDLFERQMLKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDAT
200 210 220 230 240 250
220 230 240 250 260 270
pF1KSD YTALFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YTALFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVF
260 270 280 290 300 310
280 290 300 310 320 330
pF1KSD KEIIHKGHVVTEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KEIIHKGHVVTEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAAR
320 330 340 350 360 370
340 350 360 370 380 390
pF1KSD DCGLGDPQVASELLLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DCGLGDPQVASELLLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFL
380 390 400 410 420 430
400 410 420 430 440 450
pF1KSD EPSQALGPPEPPEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVELEVNLLTPGAVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EPSQALGPPEPPEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVELEVNLLTPGAVPP
440 450 460 470 480 490
460 470 480 490 500 510
pF1KSD TVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAESLLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAESLLLAL
500 510 520 530 540 550
520 530 540 550 560 570
pF1KSD LDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRPKD
560 570 580 590 600 610
580 590 600 610 620 630
pF1KSD GLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQLEF
620 630 640 650 660 670
640 650 660 670 680 690
pF1KSD AAQYPPTFDRYQGKNTYLEKIDGFRAYYKQWLTVMPAEETPHPWQKFRTKPQGDQDTGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AAQYPPTFDRYQGKNTYLEKIDGFRAYYKQWLTVMPAEETPHPWQKFRTKPQGDQDTGKE
680 690 700 710 720 730
700
pF1KSD ADDGCALGGR
::::::::::
CCDS56 ADDGCALGGR
740
700 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:22:51 2016 done: Thu Nov 3 02:22:51 2016
Total Scan time: 3.810 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]