FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0632, 700 aa
  1>>>pF1KSDA0632 700 - 700 aa - 700 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5045+/-0.000334; mu= 9.9260+/- 0.021
 mean_var=126.1246+/-25.539, 0's: 0 Z-trim(118.7): 1  B-trim: 289 in 1/54
 Lambda= 0.114202
 statistics sampled from 31834 (31835) to 31834 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.373), width:  16
 Scan time: 12.060

The best scores are:                                      opt bits E(85289)
NP_056360 (OMIM: 614774) pentatricopeptide repeat- ( 700) 4672 781.2       0


>>NP_056360 (OMIM: 614774) pentatricopeptide repeat-cont  (700 aa)
 initn: 4672 init1: 4672 opt: 4672  Z-score: 4165.2  bits: 781.2 E(85289):    0
Smith-Waterman score: 4672; 100.0% identity (100.0% similar) in 700 aa overlap (1-700:1-700)

               10        20        30        40        50        60
pF1KSD MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWAPFSSSSSQLPLGQERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWAPFSSSSSQLPLGQERQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHNLRFGERRDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHNLRFGERRDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD HRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 HRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD ALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LNYTYLISILKDMKQNRVPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LNYTYLISILKDMKQNRVPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQ
              610       620       630       640       650       660

              670       680       690       700
pF1KSD WLTVMPAEETPHPWQKFRTKPQGDQDTGKEADDGCALGGR
       ::::::::::::::::::::::::::::::::::::::::
NP_056 WLTVMPAEETPHPWQKFRTKPQGDQDTGKEADDGCALGGR
              670       680       690       700




700 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:22:51 2016 done: Thu Nov  3 02:22:53 2016
 Total Scan time: 12.060 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]