Result of FASTA (ccds) for
pF1KSDA0640
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0640, 585 aa
1>>>pF1KSDA0640 585 - 585 aa - 585 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.2242+/-0.00146; mu= -16.6286+/- 0.086
mean_var=598.1908+/-125.786, 0's: 0 Z-trim(110.9): 35 B-trim: 84 in 1/51
Lambda= 0.052439
statistics sampled from 11944 (11957) to 11944 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.367), width: 16
Scan time: 3.520
The best scores are: opt bits E(32554)
CCDS31426.1 SWAP70 gene_id:23075|Hs108|chr11 ( 585) 3826 305.0 1.7e-82
CCDS73257.1 SWAP70 gene_id:23075|Hs108|chr11 ( 527) 2902 235.0 1.8e-61
CCDS4802.1 DEF6 gene_id:50619|Hs108|chr6 ( 631) 1719 145.6 1.7e-34
>>CCDS31426.1 SWAP70 gene_id:23075|Hs108|chr11 (585 aa)
initn: 3826 init1: 3826 opt: 3826 Z-score: 1594.5 bits: 305.0 E(32554): 1.7e-82
Smith-Waterman score: 3826; 99.8% identity (100.0% similar) in 585 aa overlap (1-585:1-585)
10 20 30 40 50 60
pF1KSD MGSLKEELLKAIWHAFTALDQDHSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGSLKEELLKAIWHAFTALDQDHSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EGPVSNQGYMPYLNRFILEKVQDNFDKIEFNRMCWTLCVKKNLTKNPLLITEEDAFKIWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EGPVSNQGYMPYLNRFILEKVQDNFDKIEFNRMCWTLCVKKNLTKNPLLITEEDAFKIWV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD IFNFLSEDKYPLIIVSEEIEYLLKKLTEAMGGGWQQEQFEHYKINFDDSKNGLSAWELIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IFNFLSEDKYPLIIVSEEIEYLLKKLTEAMGGGWQQEQFEHYKINFDDSKNGLSAWELIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFVLKPNIIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFVLKPNIIS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IHSTIHLLKLGSPPPHKEARQRRKELRKKQLAEQEELERQMKELQAANESKQQELEAVRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IHSTIHLLKLGSPPPHKEARQRRKELRKKQLAEQEELERQMKELQAANESKQQELEAVRK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD KLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD ELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQAIQTTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQAIQTTEA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD EKQELENQRVLKEQALQEAMEQLEELELERKQALEQYEEVKKKLEMATNKTKSWKDKVAH
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS31 EKQELENQRVLKEQALQEAMEQLEQLELERKQALEQYEEVKKKLEMATNKTKSWKDKVAH
490 500 510 520 530 540
550 560 570 580
pF1KSD HEGLIRLIEPGSKNPHLITNWGPAAFTEAELEEREKNWKEKKTTE
:::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HEGLIRLIEPGSKNPHLITNWGPAAFTEAELEEREKNWKEKKTTE
550 560 570 580
>>CCDS73257.1 SWAP70 gene_id:23075|Hs108|chr11 (527 aa)
initn: 2899 init1: 2899 opt: 2902 Z-score: 1217.2 bits: 235.0 E(32554): 1.8e-61
Smith-Waterman score: 3306; 89.9% identity (90.1% similar) in 585 aa overlap (1-585:1-527)
10 20 30 40 50 60
pF1KSD MGSLKEELLKAIWHAFTALDQDHSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MGSLKEELLKAIWHAFTALDQDHSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EGPVSNQGYMPYLNRFILEKVQDNFDKIEFNRMCWTLCVKKNLTKNPLLITEEDAFKIWV
::::::::::::::::::::
CCDS73 EGPVSNQGYMPYLNRFILEK----------------------------------------
70 80
130 140 150 160 170 180
pF1KSD IFNFLSEDKYPLIIVSEEIEYLLKKLTEAMGGGWQQEQFEHYKINFDDSKNGLSAWELIE
::::::::::::::::::::::::::::::::::::::::::
CCDS73 ------------------IEYLLKKLTEAMGGGWQQEQFEHYKINFDDSKNGLSAWELIE
90 100 110 120
190 200 210 220 230 240
pF1KSD LIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFVLKPNIIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFVLKPNIIS
130 140 150 160 170 180
250 260 270 280 290 300
pF1KSD YYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQA
190 200 210 220 230 240
310 320 330 340 350 360
pF1KSD IHSTIHLLKLGSPPPHKEARQRRKELRKKQLAEQEELERQMKELQAANESKQQELEAVRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IHSTIHLLKLGSPPPHKEARQRRKELRKKQLAEQEELERQMKELQAANESKQQELEAVRK
250 260 270 280 290 300
370 380 390 400 410 420
pF1KSD KLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVR
310 320 330 340 350 360
430 440 450 460 470 480
pF1KSD ELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQAIQTTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQAIQTTEA
370 380 390 400 410 420
490 500 510 520 530 540
pF1KSD EKQELENQRVLKEQALQEAMEQLEELELERKQALEQYEEVKKKLEMATNKTKSWKDKVAH
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS73 EKQELENQRVLKEQALQEAMEQLEQLELERKQALEQYEEVKKKLEMATNKTKSWKDKVAH
430 440 450 460 470 480
550 560 570 580
pF1KSD HEGLIRLIEPGSKNPHLITNWGPAAFTEAELEEREKNWKEKKTTE
:::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HEGLIRLIEPGSKNPHLITNWGPAAFTEAELEEREKNWKEKKTTE
490 500 510 520
>>CCDS4802.1 DEF6 gene_id:50619|Hs108|chr6 (631 aa)
initn: 1707 init1: 632 opt: 1719 Z-score: 732.6 bits: 145.6 E(32554): 1.7e-34
Smith-Waterman score: 1719; 45.7% identity (76.4% similar) in 588 aa overlap (3-579:2-583)
10 20 30 40 50 60
pF1KSD MGSLKEELLKAIWHAFTALDQDHSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDD
.:..::::.::.:::::: ..:::::::::::::::: :::..:::::::::::::::
CCDS48 MALRKELLKSIWYAFTALDVEKSGKVSKSQLKVLSHNLYTVLHIPHDPVALEEHFRDDD
10 20 30 40 50
70 80 90 100 110
pF1KSD EGPVSNQGYMPYLNRFILEKVQDN-FDKIEFNRMCWTLCVKKNL---TKNPLLITEEDAF
.::::.::::::::..::.::... : : .:...:::: .::: ... .....:::
CCDS48 DGPVSSQGYMPYLNKYILDKVEEGAFVKEHFDELCWTLTAKKNYRADSNGNSMLSNQDAF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KSD KIWVIFNFLSEDKYPLIIVSEEIEYLLKKLTEAMG---GGWQQEQFEHYKINFDDSKNGL
..: .::::::::::::.: .:.::::::. .:. . . :.. . . .. .::
CCDS48 RLWCLFNFLSEDKYPLIMVPDEVEYLLKKVLSSMSLEVSLGELEELLAQEAQVAQTTGGL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD SAWELIELIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFV
:.:...::...:. .:. :.:.::::.::..::: :::::::. :.:: :.::.::::
CCDS48 SVWQFLELFNSGRCLRGVGRDTLSMAIHEVYQELIQDVLKQGYLWKRGHLRRNWAERWFQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KSD LKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKK
:.:. . :. ::. :.:.: : :: .:::: :::.:::.:.: :: ..:.:.:::: ..
CCDS48 LQPSCLCYFGSEECKEKRGIIPLDAHCCVEVLPDRDGKRCMFCVKTANRTYEMSASDTRQ
240 250 260 270 280 290
300 310 320 330 340
pF1KSD KQEWIQAIHSTIHLLKLGSPPPHKEARQRRKELR----KKQLAEQEELERQMKELQAANE
.::: ::. .:.: :. ::. .:.:.: : ... :..::: : ...:: .:
CCDS48 RQEWTAAIQMAIRLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLR-LQQLQEEKE
300 310 320 330 340 350
350 360 370 380 390 400
pF1KSD SKQQELEAVRKKLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKS
: :::: ... ..: :::..: . . ::: . .:.. . : .:. .. :
CCDS48 RKLQELELLQEAQRQAERLLQEEEERRRSQHRELQQALEGQLREAEQARASMQAEMELKE
360 370 380 390 400 410
410 420 430 440 450 460
pF1KSD SELEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHL
: . ::..:::.: .:::::. : .::.:::.:: :.:::::: : .: . .
CCDS48 EEAARQRQRIKELEEMQQRLQEALQLEVKARRDEESVRIAQTRLLEEEEEKLKQLMQLKE
420 430 440 450 460 470
470 480 490 500 510 520
pF1KSD EQQQAIQTTEAEKQELENQRVLKEQALQEAMEQLEELELERKQALEQYEEVKKKLEMATN
::.. :. .. ::.::... . . ..::.:..::::.. .:..: :. : ...::..:..
CCDS48 EQERYIERAQQEKEELQQEMAQQSRSLQQAQQQLEEVRQNRQRADEDVEAAQRKLRQAST
480 490 500 510 520 530
530 540 550 560 570 580
pF1KSD KTKSWKDKVAHHEGLIRLIEPGSKNPHLITNWGPAAFTEAELEEREKNWKEKKTTE
..: :. .. . :.. ::::.: : .:. . ..: : .:... :
CCDS48 NVKHWNVQMNR---LMHPIEPGDKRP--VTSSSFSGFQPPLLAHRDSSLKRLTRWGSQGN
540 550 560 570 580 590
CCDS48 RTPSPNSNEQQKSLNGGDEAPAPASTPQEDKLDPAPEN
600 610 620 630
585 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:27:21 2016 done: Thu Nov 3 02:27:21 2016
Total Scan time: 3.520 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]