Result of FASTA (ccds) for
pF1KSDA0652
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0652, 517 aa
1>>>pF1KSDA0652 517 - 517 aa - 517 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8680+/-0.000845; mu= 10.9693+/- 0.051
mean_var=97.3423+/-19.748, 0's: 0 Z-trim(108.7): 17 B-trim: 39 in 1/51
Lambda= 0.129994
statistics sampled from 10385 (10392) to 10385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.319), width: 16
Scan time: 2.870
The best scores are: opt bits E(32554)
CCDS44582.1 ATG13 gene_id:9776|Hs108|chr11 ( 517) 3419 651.6 6.1e-187
CCDS55760.1 ATG13 gene_id:9776|Hs108|chr11 ( 550) 1744 337.5 2.4e-92
CCDS7921.1 ATG13 gene_id:9776|Hs108|chr11 ( 480) 1738 336.3 4.6e-92
CCDS55761.1 ATG13 gene_id:9776|Hs108|chr11 ( 401) 1470 286.1 5.2e-77
>>CCDS44582.1 ATG13 gene_id:9776|Hs108|chr11 (517 aa)
initn: 3419 init1: 3419 opt: 3419 Z-score: 3469.7 bits: 651.6 E(32554): 6.1e-187
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)
10 20 30 40 50 60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
430 440 450 460 470 480
490 500 510
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
:::::::::::::::::::::::::::::::::::::
CCDS44 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
490 500 510
>>CCDS55760.1 ATG13 gene_id:9776|Hs108|chr11 (550 aa)
initn: 1733 init1: 1733 opt: 1744 Z-score: 1771.5 bits: 337.5 E(32554): 2.4e-92
Smith-Waterman score: 3343; 94.0% identity (94.0% similar) in 550 aa overlap (1-517:1-550)
10 20 30 40 50 60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
190 200 210 220 230 240
250 260
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQ---------------------------------LSSS
::::::::::::::::::::::: ::::
CCDS55 IYPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVVTDTLRVPMAGLAFSHQLSSS
250 260 270 280 290 300
270 280 290 300 310 320
pF1KSD RLSYQPAALGVGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RLSYQPAALGVGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQER
310 320 330 340 350 360
330 340 350 360 370 380
pF1KSD LATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL
370 380 390 400 410 420
390 400 410 420 430 440
pF1KSD TSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMI
430 440 450 460 470 480
450 460 470 480 490 500
pF1KSD DFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVR
490 500 510 520 530 540
510
pF1KSD EFDAFVETLQ
::::::::::
CCDS55 EFDAFVETLQ
550
>>CCDS7921.1 ATG13 gene_id:9776|Hs108|chr11 (480 aa)
initn: 1738 init1: 1738 opt: 1738 Z-score: 1766.4 bits: 336.3 E(32554): 4.6e-92
Smith-Waterman score: 3096; 92.8% identity (92.8% similar) in 517 aa overlap (1-517:1-480)
10 20 30 40 50 60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
::::::::::::::::::::::::
CCDS79 IYPSVEDSQEVCTTSFSTSPPSQL------------------------------------
250 260
310 320 330 340 350 360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 -MVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
270 280 290 300 310 320
370 380 390 400 410 420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
330 340 350 360 370 380
430 440 450 460 470 480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
390 400 410 420 430 440
490 500 510
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
:::::::::::::::::::::::::::::::::::::
CCDS79 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
450 460 470 480
>>CCDS55761.1 ATG13 gene_id:9776|Hs108|chr11 (401 aa)
initn: 1468 init1: 1468 opt: 1470 Z-score: 1496.0 bits: 286.1 E(32554): 5.2e-77
Smith-Waterman score: 2587; 91.6% identity (91.6% similar) in 438 aa overlap (80-517:1-401)
50 60 70 80 90 100
pF1KSD WFNLAIKDIPEVTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDK
::::::::::::::::::::::::::::::
CCDS55 MCVEISLKTSEGDSMELEIWCLEMNEKCDK
10 20 30
110 120 130 140 150 160
pF1KSD EIKVSYTVYNRLSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EIKVSYTVYNRLSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQ
40 50 60 70 80 90
170 180 190 200 210 220
pF1KSD TVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPC
100 110 120 130 140 150
230 240 250 260 270 280
pF1KSD NYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVF
:::::::::::::::::::::::::::::::::::
CCDS55 NYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQL-------------------------
160 170 180
290 300 310 320 330 340
pF1KSD AAGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDT
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ------------MVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDT
190 200 210 220 230
350 360 370 380 390 400
pF1KSD ETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDP
240 250 260 270 280 290
410 420 430 440 450 460
pF1KSD MVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYRE
300 310 320 330 340 350
470 480 490 500 510
pF1KSD FQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
360 370 380 390 400
517 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:30:55 2016 done: Thu Nov 3 02:30:56 2016
Total Scan time: 2.870 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]