Result of FASTA (ccds) for
pF1KSDA0658
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0658, 593 aa
1>>>pF1KSDA0658 593 - 593 aa - 593 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8021+/-0.000778; mu= 12.5599+/- 0.047
mean_var=105.4511+/-20.914, 0's: 0 Z-trim(111.2): 4 B-trim: 7 in 1/51
Lambda= 0.124896
statistics sampled from 12152 (12155) to 12152 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.373), width: 16
Scan time: 2.930
The best scores are: opt bits E(32554)
CCDS7915.2 CRY2 gene_id:1408|Hs108|chr11 ( 614) 4096 748.6 5.1e-216
CCDS44576.1 CRY2 gene_id:1408|Hs108|chr11 ( 532) 3607 660.5 1.5e-189
CCDS9112.1 CRY1 gene_id:1407|Hs108|chr12 ( 586) 2978 547.2 2.2e-155
>>CCDS7915.2 CRY2 gene_id:1408|Hs108|chr11 (614 aa)
initn: 4096 init1: 4096 opt: 4096 Z-score: 3991.7 bits: 748.6 E(32554): 5.1e-216
Smith-Waterman score: 4096; 100.0% identity (100.0% similar) in 593 aa overlap (1-593:22-614)
10 20 30
pF1KSD MAATVATAAAVAPAPAPGTDSASSVHWFRKGLRLHDNPA
:::::::::::::::::::::::::::::::::::::::
CCDS79 MGGVHVAYRGGAGVAGAVWTVMAATVATAAAVAPAPAPGTDSASSVHWFRKGLRLHDNPA
10 20 30 40 50 60
40 50 60 70 80 90
pF1KSD LLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KSD ADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIE
130 140 150 160 170 180
160 170 180 190 200 210
pF1KSD LNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGF
190 200 210 220 230 240
220 230 240 250 260 270
pF1KSD PTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 PTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCL
250 260 270 280 290 300
280 290 300 310 320 330
pF1KSD SCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW
310 320 330 340 350 360
340 350 360 370 380 390
pF1KSD DRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 DRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRV
370 380 390 400 410 420
400 410 420 430 440 450
pF1KSD FDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 FDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFP
430 440 450 460 470 480
460 470 480 490 500 510
pF1KSD SRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLL
490 500 510 520 530 540
520 530 540 550 560 570
pF1KSD ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRAR
550 560 570 580 590 600
580 590
pF1KSD VAELPTPELPSKDA
::::::::::::::
CCDS79 VAELPTPELPSKDA
610
>>CCDS44576.1 CRY2 gene_id:1408|Hs108|chr11 (532 aa)
initn: 3604 init1: 3604 opt: 3607 Z-score: 3516.4 bits: 660.5 E(32554): 1.5e-189
Smith-Waterman score: 3607; 99.8% identity (99.8% similar) in 523 aa overlap (71-593:11-532)
50 60 70 80 90 100
pF1KSD LAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPA
: ::::::::::::::::::::::::::::
CCDS44 MPAPPGRTHTW-FLLQSLEDLDTSLRKLNSRLFVVRGQPA
10 20 30
110 120 130 140 150 160
pF1KSD DVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIEL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KSD NGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFP
100 110 120 130 140 150
230 240 250 260 270 280
pF1KSD TEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLS
160 170 180 190 200 210
290 300 310 320 330 340
pF1KSD CRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWD
220 230 240 250 260 270
350 360 370 380 390 400
pF1KSD RNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVF
280 290 300 310 320 330
410 420 430 440 450 460
pF1KSD DELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPS
340 350 360 370 380 390
470 480 490 500 510 520
pF1KSD RYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLLA
400 410 420 430 440 450
530 540 550 560 570 580
pF1KSD SVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRARV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRARV
460 470 480 490 500 510
590
pF1KSD AELPTPELPSKDA
:::::::::::::
CCDS44 AELPTPELPSKDA
520 530
>>CCDS9112.1 CRY1 gene_id:1407|Hs108|chr12 (586 aa)
initn: 2976 init1: 2976 opt: 2978 Z-score: 2903.2 bits: 547.2 E(32554): 2.2e-155
Smith-Waterman score: 2978; 74.8% identity (89.3% similar) in 563 aa overlap (23-579:4-566)
10 20 30 40 50 60
pF1KSD MAATVATAAAVAPAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWF
..:::::::::::::::: ..:: .::::::::::
CCDS91 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWF
10 20 30 40
70 80 90 100 110 120
pF1KSD AASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYD
:.::.::::::::::: :::::..::::::::::.:::::::::::::::..:.:..:::
CCDS91 AGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KSD SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME
:::::::::::: :.: ::::::... ::::::::.:::::: .:::::::::..::.::
CCDS91 SEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKME
110 120 130 140 150 160
190 200 210 220 230 240
pF1KSD LPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL
. :: .::. .:.: . ....::: ::::::::::: :.::. ::: :::::::.::
CCDS91 PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRL
170 180 190 200 210 220
250 260 270 280 290 300
pF1KSD DKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNST
..::::::::::.::::::::::::::::::::::::::::::::..: :::::::.::.
CCDS91 ERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSS
230 240 250 260 270 280
310 320 330 340 350 360
pF1KSD PPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWID
:::::.::::::::::::::::::::.:::::::.:::::.:::::::::::.:::::::
CCDS91 PPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWID
290 300 310 320 330 340
370 380 390 400 410 420
pF1KSD AIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLS
::::::::::::::::::::::::::::::.::: :..::.:::::::.:.:::::::::
CCDS91 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLS
350 360 370 380 390 400
430 440 450 460 470 480
pF1KSD CSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCI
::.::::::::::::::::::::.::::::::: :..::..:::.::::::.:::.:::.
CCDS91 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCL
410 420 430 440 450 460
490 500 510 520 530
pF1KSD IGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLLASVPSCVED---LSHPVAE--
:::.::.:.:::::.::::::::::::::::::::: ::::::: . . ::
CCDS91 IGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGLGLLASVPSNPNGNGGFMGYSAENI
470 480 490 500 510 520
540 550 560 570 580 590
pF1KSD PSSSQAGSMSS-AGPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPSKDA
:. :..:: :. .: : .. . :. .. : :: :
CCDS91 PGCSSSGSCSQGSGILHYAHGDSQQTHLLKQGRSSMGTGLSGGKRPSQEEDTQSIGPKVQ
530 540 550 560 570 580
CCDS91 RQSTN
593 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:33:06 2016 done: Thu Nov 3 02:33:06 2016
Total Scan time: 2.930 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]