Result of FASTA (ccds) for
pF1KSDA0661
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0661, 1001 aa
1>>>pF1KSDA0661 1001 - 1001 aa - 1001 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7301+/-0.00114; mu= -0.8112+/- 0.068
mean_var=364.6149+/-76.677, 0's: 0 Z-trim(113.1): 76 B-trim: 328 in 2/52
Lambda= 0.067167
statistics sampled from 13742 (13811) to 13742 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.424), width: 16
Scan time: 5.780
The best scores are: opt bits E(32554)
CCDS10691.1 RNF40 gene_id:9810|Hs108|chr16 (1001) 6414 636.4 8.5e-182
CCDS55994.1 RNF40 gene_id:9810|Hs108|chr16 ( 901) 3710 374.4 5.9e-103
CCDS35084.1 RNF20 gene_id:56254|Hs108|chr9 ( 975) 1804 189.7 2.5e-47
>>CCDS10691.1 RNF40 gene_id:9810|Hs108|chr16 (1001 aa)
initn: 6414 init1: 6414 opt: 6414 Z-score: 3377.3 bits: 636.4 E(32554): 8.5e-182
Smith-Waterman score: 6414; 100.0% identity (100.0% similar) in 1001 aa overlap (1-1001:1-1001)
10 20 30 40 50 60
pF1KSD MSGPGNKRAAGDGGSGPPEKKLSREEKTTTTLIEPIRLGGISSTEEMDLKVLQFKNKKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSGPGNKRAAGDGGSGPPEKKLSREEKTTTTLIEPIRLGGISSTEEMDLKVLQFKNKKLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD ERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD APEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 APEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYSRGDSEPLSEAAQAHTRELGRENRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYSRGDSEPLSEAAQAHTRELGRENRRL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD QDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AEALEQLNSGYYVSGSSSGFQGGQITLSMQKFEMLNAELEENQELANSRMAELEKLQAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AEALEQLNSGYYVSGSSSGFQGGQITLSMQKFEMLNAELEENQELANSRMAELEKLQAEL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD QGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLATK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPIN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD REMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKLRAQASGSAHSTPNLGHPEDSGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 REMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKLRAQASGSAHSTPNLGHPEDSGV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SAPAPGKEEGGPGPVSTPDNRKEMAPVPGTTTTTTSVKKEELVPSEEDFQGITPGAQGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SAPAPGKEEGGPGPVSTPDNRKEMAPVPGTTTTTTSVKKEELVPSEEDFQGITPGAQGPS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD SRGREPEARPKRELREREGPSLGPPPVASALSRADREKAKVEETKRKESELLKGLRAELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SRGREPEARPKRELREREGPSLGPPPVASALSRADREKAKVEETKRKESELLKGLRAELK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD IADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD EKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQG
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD SLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVL
910 920 930 940 950 960
970 980 990 1000
pF1KSD TKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYIS
:::::::::::::::::::::::::::::::::::::::::
CCDS10 TKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYIS
970 980 990 1000
>>CCDS55994.1 RNF40 gene_id:9810|Hs108|chr16 (901 aa)
initn: 3674 init1: 3674 opt: 3710 Z-score: 1961.8 bits: 374.4 E(32554): 5.9e-103
Smith-Waterman score: 5589; 90.0% identity (90.0% similar) in 1001 aa overlap (1-1001:1-901)
10 20 30 40 50 60
pF1KSD MSGPGNKRAAGDGGSGPPEKKLSREEKTTTTLIEPIRLGGISSTEEMDLKVLQFKNKKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSGPGNKRAAGDGGSGPPEKKLSREEKTTTTLIEPIRLGGISSTEEMDLKVLQFKNKKLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD ERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD APEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 APEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYSRGDSEPLSEAAQAHTRELGRENRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYSRGDSEPLSEAAQAHTRELGRENRRL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD QDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AEALEQLNSGYYVSGSSSGFQGGQITLSMQKFEMLNAELEENQELANSRMAELEKLQAEL
:::::::::::::::::::::::::::::::
CCDS55 AEALEQLNSGYYVSGSSSGFQGGQITLSMQK-----------------------------
310 320 330
370 380 390 400 410 420
pF1KSD QGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLATK
CCDS55 ------------------------------------------------------------
430 440 450 460 470 480
pF1KSD NSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPIN
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 -----------SDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPIN
340 350 360 370 380
490 500 510 520 530 540
pF1KSD REMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKLRAQASGSAHSTPNLGHPEDSGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 REMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKLRAQASGSAHSTPNLGHPEDSGV
390 400 410 420 430 440
550 560 570 580 590 600
pF1KSD SAPAPGKEEGGPGPVSTPDNRKEMAPVPGTTTTTTSVKKEELVPSEEDFQGITPGAQGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SAPAPGKEEGGPGPVSTPDNRKEMAPVPGTTTTTTSVKKEELVPSEEDFQGITPGAQGPS
450 460 470 480 490 500
610 620 630 640 650 660
pF1KSD SRGREPEARPKRELREREGPSLGPPPVASALSRADREKAKVEETKRKESELLKGLRAELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SRGREPEARPKRELREREGPSLGPPPVASALSRADREKAKVEETKRKESELLKGLRAELK
510 520 530 540 550 560
670 680 690 700 710 720
pF1KSD KAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKK
570 580 590 600 610 620
730 740 750 760 770 780
pF1KSD IADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLR
630 640 650 660 670 680
790 800 810 820 830 840
pF1KSD EKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQG
690 700 710 720 730 740
850 860 870 880 890 900
pF1KSD SLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREK
750 760 770 780 790 800
910 920 930 940 950 960
pF1KSD ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVL
810 820 830 840 850 860
970 980 990 1000
pF1KSD TKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYIS
:::::::::::::::::::::::::::::::::::::::::
CCDS55 TKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYIS
870 880 890 900
>>CCDS35084.1 RNF20 gene_id:56254|Hs108|chr9 (975 aa)
initn: 3082 init1: 1767 opt: 1804 Z-score: 963.2 bits: 189.7 E(32554): 2.5e-47
Smith-Waterman score: 3581; 58.8% identity (81.3% similar) in 1005 aa overlap (1-1000:1-974)
10 20 30 40 50
pF1KSD MSGPGNKRAAGDGGSG-PPEKKLSREEKTTTTLIEPIRLGGISSTEEMDLKVLQFKNKKL
::: :::::::. :.. ::::: . :.. :: .: :.:::.:::::.:...:: ::.::
CCDS35 MSGIGNKRAAGEPGTSMPPEKKAAVEDSGTT--VETIKLGGVSSTEELDIRTLQTKNRKL
10 20 30 40 50
60 70 80 90 100 110
pF1KSD AERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHE-SQGEL
:: :.:::: ::::::.:::::.:::::::.::::::::.:.::... .:. .. ::
CCDS35 AEMLDQRQAIEDELREHIEKLERRQATDDASLLIVNRYWSQFDENIRIILKRYDLEQGLG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KSD SSAPEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVE
. : . .: ::: .. .. . : .:::..:...:..:::::.:
CCDS35 DLLTERKALV-------VPEPEPDSDSNQERKDDRERGEGQEPAFSFLATLASSSSEEME
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD LELQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYSRGDSEPLSEAAQAHTRELGRENR
.:: :.: :. :::..: . :.::..:: : ... : ::. . ::.: . :..::
CCDS35 SQLQERVESSRRAVSQIVTVYDKLQEKVELLSRKLNS-GDNLIVEEAVQELNSFLAQENM
180 190 200 210 220 230
240 250 260 270 280 290
pF1KSD RLQDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNK
:::.:. :::::. .: :.:.::.:: .::..: .:. ..::::::.:.:::::.::.
CCDS35 RLQELTDLLQEKHRTMSQEFSKLQSKVETAESRVSVLESMIDDLQWDIDKIRKREQRLNR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KSD HLAEALEQLNS-GYYVSGSSSGFQGGQITLSMQKFEMLNAELEENQELANSRMAELEKLQ
::::.::..:: :: : :..:.. :: ::.. .::: .:::::::.:::..:. :::::.
CCDS35 HLAEVLERVNSKGYKVYGAGSSLYGGTITINARKFEEMNAELEENKELAQNRLCELEKLR
300 310 320 330 340 350
360 370 380 390 400 410
pF1KSD AELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLL
... .. ::.::: ::: :.::.:: ::: .:.:::.:::::::.:..::::: ::
CCDS35 QDFEEVTTQNEKLKVELRSAVEQVVKETPEYRCMQSQFSVLYNESLQLKAHLDEARTLLH
360 370 380 390 400 410
420 430 440 450 460 470
pF1KSD ATKNSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAG
.:...: ...: .: ::..:.::::::::::::::::::::::::::::::.::::::::
CCDS35 GTRGTHQHQVELIERDEVSLHKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQTLAANEQAG
420 430 440 450 460 470
480 490 500 510 520 530
pF1KSD PINREMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKLRAQASGSA--HSTPNLGHP
::::::::::::::::::::::.. ::::::::.:....: : . :::: .: . :
CCDS35 PINREMRHLISSLQNHNHQLKGEVLRYKRKLREAQSDLNKTRLR-SGSALLQSQSSTEDP
480 490 500 510 520
540 550 560 570 580 590
pF1KSD EDSGVSAPAPGKEEGGPGPVSTPDNRKEMAPVPGTTTTTTSVKKEELVPSEEDFQGITPG
.: :: : ::. .... .... .: . . . :..: .
CCDS35 KDE----PAELK----------PDS-EDLS--SQSSASKASQEDANEIKSKRDEEE-RER
530 540 550 560 570
600 610 620 630 640 650
pF1KSD AQGPSSRGREPEARPKRELREREGPSLGPPPVASALSRADREKAKVEETKRKESELLKGL
. . : :: : : :.. :::: .: : :.::.: .. ..::.:..: :
CCDS35 ERREKERERERE-REKEKEREREKQKLKESEKERD-SAKDKEKGKHDDGRKKEAEIIKQL
580 590 600 610 620
660 670 680 690 700 710
pF1KSD RAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDR
. :::::::::::::::::::.::::::::::::::::.:.:::...::.:...::....
CCDS35 KIELKKAQESQKEMKLLLDMYRSAPKEQRDKVQLMAAEKKSKAELEDLRQRLKDLEDKEK
630 640 650 660 670 680
720 730 740 750 760 770
pF1KSD RESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRL
.:.::.:::::::.:: .:::::.::.::. .::::::::::::::::::::::::: ::
CCDS35 KENKKMADEDALRKIRAVEEQIEYLQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRL
690 700 710 720 730 740
780 790 800 810 820 830
pF1KSD LQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKE
.:::::::::::::::::::.:::::::.:::.::..::: ::.:::::: .:.::::::
CCDS35 MQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVDAQLQVVRKLEEKE
750 760 770 780 790 800
840 850 860 870 880 890
pF1KSD RALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESR
. ::...: :::: ::.::::.:::::.::::::.:::.::: .: .:...: ..:.
CCDS35 HLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLELAQKKLHDFQDEIVENS
810 820 830 840 850 860
900 910 920 930 940 950
pF1KSD AAREKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRK
...::. ::.::::::::::::::: .: . ::::.::::.::::::::::: ::
CCDS35 VTKEKDMFNFKRAQEDISRLRRKLETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRK
870 880 890 900 910 920
960 970 980 990 1000
pF1KSD KDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYIS
:::::::::::::::::. ::..::::::::::::::.:::::::
CCDS35 KDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG
930 940 950 960 970
1001 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:37:29 2016 done: Thu Nov 3 18:37:30 2016
Total Scan time: 5.780 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]