FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0663, 810 aa
  1>>>pF1KSDA0663 810 - 810 aa - 810 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6022+/-0.000927; mu= 6.0772+/- 0.056
 mean_var=175.1755+/-34.707, 0's: 0 Z-trim(111.7): 21  B-trim: 0 in 0/51
 Lambda= 0.096903
 statistics sampled from 12535 (12550) to 12535 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.386), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS30978.1 ZC3H11A gene_id:9877|Hs108|chr1        ( 810) 5246 746.0 5.7e-215


>>CCDS30978.1 ZC3H11A gene_id:9877|Hs108|chr1             (810 aa)
 initn: 5246 init1: 5246 opt: 5246  Z-score: 3972.9  bits: 746.0 E(32554): 5.7e-215
Smith-Waterman score: 5246; 100.0% identity (100.0% similar) in 810 aa overlap (1-810:1-810)

               10        20        30        40        50        60
pF1KSD MPNQGEDCYFFFYSTCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFRQVCRFRHMEIDKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MPNQGEDCYFFFYSTCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFRQVCRFRHMEIDKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RSEIPCYWENQPTGCQKLNCAFHHNRGRYVDGLFLPPSKTVLPTVPESPEEEVKASQLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RSEIPCYWENQPTGCQKLNCAFHHNRGRYVDGLFLPPSKTVLPTVPESPEEEVKASQLSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QQNKLSVQSNPSPQLRSVMKVESSENVPSPTHPPVVINAADDDEDDDDQFSEEGDETKTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QQNKLSVQSNPSPQLRSVMKVESSENVPSPTHPPVVINAADDDEDDDDQFSEEGDETKTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TLQPTPEVHNGLRVTSVRKPAVNIKQGECLNFGIKTLEEIKSKKMKEKSKKQGEGSSGVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TLQPTPEVHNGLRVTSVRKPAVNIKQGECLNFGIKTLEEIKSKKMKEKSKKQGEGSSGVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SLLLHPEPVPGPEKENVRTVVRTVTLSTKQGEEPLVRLSLTERLGKRKFSAGGDSDPPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SLLLHPEPVPGPEKENVRTVVRTVTLSTKQGEEPLVRLSLTERLGKRKFSAGGDSDPPLK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RSLAQRLGKKVEAPETNIDKTPKKAQVSKSLKERLGMSADPDNEDATDKVNKVGEIHVKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RSLAQRLGKKVEAPETNIDKTPKKAQVSKSLKERLGMSADPDNEDATDKVNKVGEIHVKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LEEILLERASQKRGELQTKLKTEGPSKTDDSTSGARSSSTIRIKTFSEVLAEKKHRQQEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LEEILLERASQKRGELQTKLKTEGPSKTDDSTSGARSSSTIRIKTFSEVLAEKKHRQQEA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD ERQKSKKDTTCIKLKIDSEIKKTVVLPPIVASRGQSEEPAGKTKSMQEVHIKTLEEIKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ERQKSKKDTTCIKLKIDSEIKKTVVLPPIVASRGQSEEPAGKTKSMQEVHIKTLEEIKLE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD KALRVQQSSESSTSSPSQHEATPGARRLLRITKRTGMKEEKNLQEGNEVDSQSSIRTEAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KALRVQQSSESSTSSPSQHEATPGARRLLRITKRTGMKEEKNLQEGNEVDSQSSIRTEAK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD EASGETTGVDITKIQVKRCETMREKHMQKQQEREKSVLTPLRGDVASCNTQVAEKPVLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EASGETTGVDITKIQVKRCETMREKHMQKQQEREKSVLTPLRGDVASCNTQVAEKPVLTA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD VPGITRHLTKRLPTKSSQKVEVETSGIGDSLLNVKCAAQTLEKRGKAKPKVNVKPSVVKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VPGITRHLTKRLPTKSSQKVEVETSGIGDSLLNVKCAAQTLEKRGKAKPKVNVKPSVVKV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VSSPKLAPKRKAVEMHAAVIAAVKPLSSSSVLQEPPAKKAAVAVVPLVSEDKSVTVPEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VSSPKLAPKRKAVEMHAAVIAAVKPLSSSSVLQEPPAKKAAVAVVPLVSEDKSVTVPEAE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NPRDSLVLPPTQSSSDSSPPEVSGPSSSQMSMKTRRLSSASTGKPPLSVEDDFEKLIWEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NPRDSLVLPPTQSSSDSSPPEVSGPSSSQMSMKTRRLSSASTGKPPLSVEDDFEKLIWEI
              730       740       750       760       770       780

              790       800       810
pF1KSD SGGKLEAEIDLDPGKDEDDLLLELSEMIDS
       ::::::::::::::::::::::::::::::
CCDS30 SGGKLEAEIDLDPGKDEDDLLLELSEMIDS
              790       800       810




810 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:35:44 2016 done: Thu Nov  3 02:35:44 2016
 Total Scan time:  2.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]