Result of FASTA (omim) for
pF1KSDA0665
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0665, 756 aa
1>>>pF1KSDA0665 756 - 756 aa - 756 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.1405+/-0.00045; mu= -10.7329+/- 0.028
mean_var=694.3513+/-142.329, 0's: 0 Z-trim(124.9): 14 B-trim: 891 in 1/61
Lambda= 0.048673
statistics sampled from 47595 (47614) to 47595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.558), width: 16
Scan time: 14.830
The best scores are: opt bits E(85289)
NP_055515 (OMIM: 608738) rab11 family-interacting ( 756) 5091 372.9 2.7e-102
XP_005255770 (OMIM: 608738) PREDICTED: rab11 famil ( 801) 3118 234.4 1.4e-60
XP_005255775 (OMIM: 608738) PREDICTED: rab11 famil ( 436) 3069 230.7 1e-59
XP_005255774 (OMIM: 608738) PREDICTED: rab11 famil ( 481) 3006 226.3 2.4e-58
XP_016879396 (OMIM: 608738) PREDICTED: rab11 famil ( 519) 3006 226.3 2.5e-58
NP_001135744 (OMIM: 608738) rab11 family-interacti ( 460) 2921 220.3 1.4e-56
XP_011521067 (OMIM: 608738) PREDICTED: rab11 famil ( 459) 2096 162.4 4e-39
XP_005255772 (OMIM: 608738) PREDICTED: rab11 famil ( 491) 2096 162.4 4.1e-39
XP_011521066 (OMIM: 608738) PREDICTED: rab11 famil ( 491) 2096 162.4 4.1e-39
XP_005255771 (OMIM: 608738) PREDICTED: rab11 famil ( 505) 2096 162.4 4.2e-39
NP_001290471 (OMIM: 611999) rab11 family-interacti ( 535) 1095 92.1 6.3e-18
NP_116321 (OMIM: 611999) rab11 family-interacting ( 637) 1095 92.2 7e-18
>>NP_055515 (OMIM: 608738) rab11 family-interacting prot (756 aa)
initn: 5091 init1: 5091 opt: 5091 Z-score: 1957.6 bits: 372.9 E(85289): 2.7e-102
Smith-Waterman score: 5091; 100.0% identity (100.0% similar) in 756 aa overlap (1-756:1-756)
10 20 30 40 50 60
pF1KSD MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PSPTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLELEKDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PSPTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLELEKDT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD AATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMEREKSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMEREKSIE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD IENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQENKRRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQENKRRM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD GDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYHSRARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYHSRARE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD SELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISSVSRDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISSVSRDEL
670 680 690 700 710 720
730 740 750
pF1KSD MEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
::::::::::::::::::::::::::::::::::::
NP_055 MEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
730 740 750
>>XP_005255770 (OMIM: 608738) PREDICTED: rab11 family-in (801 aa)
initn: 3000 init1: 3000 opt: 3118 Z-score: 1208.6 bits: 234.4 E(85289): 1.4e-60
Smith-Waterman score: 4914; 94.3% identity (94.3% similar) in 788 aa overlap (1-743:1-788)
10 20 30 40 50 60
pF1KSD MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
370 380 390 400 410 420
430
pF1KSD PS---------------------------------------------PTKRLSSKKVARY
:: :::::::::::::
XP_005 PSTDPLAAKLHSILTDEAFEFYCSQCHKQINRLEDLSARLSDLEMNSPTKRLSSKKVARY
430 440 450 460 470 480
440 450 460 470 480 490
pF1KSD LHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLELEKDTAATGEQHSRLRQENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLELEKDTAATGEQHSRLRQENL
490 500 510 520 530 540
500 510 520 530 540 550
pF1KSD QLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMEREKSIEIENLQTRLQQLDEEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMEREKSIEIENLQTRLQQLDEEN
550 560 570 580 590 600
560 570 580 590 600 610
pF1KSD SELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQENKRRMGDRLSHERHQFQRDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQENKRRMGDRLSHERHQFQRDK
610 620 630 640 650 660
620 630 640 650 660 670
pF1KSD EATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYHSRARESELEQEVRRLKQDNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYHSRARESELEQEVRRLKQDNR
670 680 690 700 710 720
680 690 700 710 720 730
pF1KSD NLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISSVSRDELMEAIQKQEEINFRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISSVSRDELMEAIQKQEEINFRLQ
730 740 750 760 770 780
740 750
pF1KSD DYIDRIIVAIMETNPSILEVK
::::::::
XP_005 DYIDRIIVAIMETNPSILEVK
790 800
>>XP_005255775 (OMIM: 608738) PREDICTED: rab11 family-in (436 aa)
initn: 3206 init1: 3069 opt: 3069 Z-score: 1193.0 bits: 230.7 E(85289): 1e-59
Smith-Waterman score: 3069; 99.3% identity (99.8% similar) in 436 aa overlap (1-436:1-436)
10 20 30 40 50 60
pF1KSD MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PSPTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLELEKDT
::::::::::::: ..
XP_005 PSPTKRLSSKKVASFV
430
>>XP_005255774 (OMIM: 608738) PREDICTED: rab11 family-in (481 aa)
initn: 3060 init1: 3000 opt: 3006 Z-score: 1168.6 bits: 226.3 E(85289): 2.4e-58
Smith-Waterman score: 3006; 96.4% identity (97.3% similar) in 448 aa overlap (1-448:1-440)
10 20 30 40 50 60
pF1KSD MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PSPTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLELEKDT
:: : :..: ::. :: ::.:
XP_005 PS-TDPLAAK-----LHS--ILTDEAFEFYCSQCHKQINRLEDLSARLSDLEMNSPTKRL
430 440 450 460 470
>>XP_016879396 (OMIM: 608738) PREDICTED: rab11 family-in (519 aa)
initn: 3000 init1: 3000 opt: 3006 Z-score: 1168.2 bits: 226.3 E(85289): 2.5e-58
Smith-Waterman score: 3183; 91.2% identity (91.2% similar) in 511 aa overlap (1-466:1-511)
10 20 30 40 50 60
pF1KSD MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
370 380 390 400 410 420
430
pF1KSD PS---------------------------------------------PTKRLSSKKVARY
:: :::::::::::::
XP_016 PSTDPLAAKLHSILTDEAFEFYCSQCHKQINRLEDLSARLSDLEMNSPTKRLSSKKVARY
430 440 450 460 470 480
440 450 460 470 480 490
pF1KSD LHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLELEKDTAATGEQHSRLRQENL
:::::::::::::::::::::::::::::::
XP_016 LHQSGALTMEALEDPSPELMEGPEEDIADKVSPRGLVAM
490 500 510
500 510 520 530 540 550
pF1KSD QLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMEREKSIEIENLQTRLQQLDEEN
>>NP_001135744 (OMIM: 608738) rab11 family-interacting p (460 aa)
initn: 2921 init1: 2921 opt: 2921 Z-score: 1136.6 bits: 220.3 E(85289): 1.4e-56
Smith-Waterman score: 2921; 99.8% identity (100.0% similar) in 456 aa overlap (301-756:5-460)
280 290 300 310 320 330
pF1KSD PDGQCYGGVASAQDEEPLACPDEFDDFVTYEANEVTDSAYMGSESTYSECETFTDEDTST
.:::::::::::::::::::::::::::::
NP_001 MPFLKANEVTDSAYMGSESTYSECETFTDEDTST
10 20 30
340 350 360 370 380 390
pF1KSD LVHPELQPEGDADSAGGSAVPSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVHPELQPEGDADSAGGSAVPSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHF
40 50 60 70 80 90
400 410 420 430 440 450
pF1KSD EDYGEGSEAELSPETLCNGQLGCSDPAFLTPSPTKRLSSKKVARYLHQSGALTMEALEDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDYGEGSEAELSPETLCNGQLGCSDPAFLTPSPTKRLSSKKVARYLHQSGALTMEALEDP
100 110 120 130 140 150
460 470 480 490 500 510
pF1KSD SPELMEGPEEDIADKVVFLERRVLELEKDTAATGEQHSRLRQENLQLVHRANALEEQLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPELMEGPEEDIADKVVFLERRVLELEKDTAATGEQHSRLRQENLQLVHRANALEEQLKE
160 170 180 190 200 210
520 530 540 550 560 570
pF1KSD QELRACEMVLEETRRQKELLCKMEREKSIEIENLQTRLQQLDEENSELRSCTPCLKANIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QELRACEMVLEETRRQKELLCKMEREKSIEIENLQTRLQQLDEENSELRSCTPCLKANIE
220 230 240 250 260 270
580 590 600 610 620 630
pF1KSD RLEEEKQKLLDEIESLTLRLSEEQENKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLEEEKQKLLDEIESLTLRLSEEQENKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLE
280 290 300 310 320 330
640 650 660 670 680 690
pF1KSD HLQLLKLEAEQRRGRSSSMGLQEYHSRARESELEQEVRRLKQDNRNLKEQNEELNGQIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLQLLKLEAEQRRGRSSSMGLQEYHSRARESELEQEVRRLKQDNRNLKEQNEELNGQIIT
340 350 360 370 380 390
700 710 720 730 740 750
pF1KSD LSIQGAKSLFSTAFSESLAAEISSVSRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSIQGAKSLFSTAFSESLAAEISSVSRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNP
400 410 420 430 440 450
pF1KSD SILEVK
::::::
NP_001 SILEVK
460
>>XP_011521067 (OMIM: 608738) PREDICTED: rab11 family-in (459 aa)
initn: 2096 init1: 2096 opt: 2096 Z-score: 823.5 bits: 162.4 E(85289): 4e-39
Smith-Waterman score: 2360; 89.4% identity (89.4% similar) in 432 aa overlap (370-756:28-459)
340 350 360 370 380 390
pF1KSD GDADSAGGSAVPSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEA
: ::::::::::::::::::::::::::::
XP_011 MASATVVSLLPKMRSPWPARTSSMTSSPMRPHPHGQSVITVIGGEEHFEDYGEGSEA
10 20 30 40 50
400 410 420
pF1KSD ELSPETLCNGQLGCSDPAFLTPS-------------------------------------
:::::::::::::::::::::::
XP_011 ELSPETLCNGQLGCSDPAFLTPSTDPLAAKLHSILTDEAFEFYCSQCHKQINRLEDLSAR
60 70 80 90 100 110
430 440 450 460 470
pF1KSD --------PTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSDLEMNSPTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVL
120 130 140 150 160 170
480 490 500 510 520 530
pF1KSD ELEKDTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELEKDTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKME
180 190 200 210 220 230
540 550 560 570 580 590
pF1KSD REKSIEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REKSIEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQ
240 250 260 270 280 290
600 610 620 630 640 650
pF1KSD ENKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEY
300 310 320 330 340 350
660 670 680 690 700 710
pF1KSD HSRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISS
360 370 380 390 400 410
720 730 740 750
pF1KSD VSRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
::::::::::::::::::::::::::::::::::::::::::
XP_011 VSRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
420 430 440 450
>>XP_005255772 (OMIM: 608738) PREDICTED: rab11 family-in (491 aa)
initn: 2096 init1: 2096 opt: 2096 Z-score: 823.1 bits: 162.4 E(85289): 4.1e-39
Smith-Waterman score: 2766; 90.8% identity (90.8% similar) in 491 aa overlap (311-756:1-491)
290 300 310 320 330 340
pF1KSD SAQDEEPLACPDEFDDFVTYEANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEG
::::::::::::::::::::::::::::::
XP_005 MGSESTYSECETFTDEDTSTLVHPELQPEG
10 20 30
350 360 370 380 390 400
pF1KSD DADSAGGSAVPSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DADSAGGSAVPSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAE
40 50 60 70 80 90
410 420
pF1KSD LSPETLCNGQLGCSDPAFLTPS--------------------------------------
::::::::::::::::::::::
XP_005 LSPETLCNGQLGCSDPAFLTPSTDPLAAKLHSILTDEAFEFYCSQCHKQINRLEDLSARL
100 110 120 130 140 150
430 440 450 460 470
pF1KSD -------PTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLE
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDLEMNSPTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLE
160 170 180 190 200 210
480 490 500 510 520 530
pF1KSD LEKDTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEKDTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMER
220 230 240 250 260 270
540 550 560 570 580 590
pF1KSD EKSIEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKSIEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQE
280 290 300 310 320 330
600 610 620 630 640 650
pF1KSD NKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYH
340 350 360 370 380 390
660 670 680 690 700 710
pF1KSD SRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISSV
400 410 420 430 440 450
720 730 740 750
pF1KSD SRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
:::::::::::::::::::::::::::::::::::::::::
XP_005 SRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
460 470 480 490
>>XP_011521066 (OMIM: 608738) PREDICTED: rab11 family-in (491 aa)
initn: 2096 init1: 2096 opt: 2096 Z-score: 823.1 bits: 162.4 E(85289): 4.1e-39
Smith-Waterman score: 2766; 90.8% identity (90.8% similar) in 491 aa overlap (311-756:1-491)
290 300 310 320 330 340
pF1KSD SAQDEEPLACPDEFDDFVTYEANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEG
::::::::::::::::::::::::::::::
XP_011 MGSESTYSECETFTDEDTSTLVHPELQPEG
10 20 30
350 360 370 380 390 400
pF1KSD DADSAGGSAVPSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DADSAGGSAVPSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAE
40 50 60 70 80 90
410 420
pF1KSD LSPETLCNGQLGCSDPAFLTPS--------------------------------------
::::::::::::::::::::::
XP_011 LSPETLCNGQLGCSDPAFLTPSTDPLAAKLHSILTDEAFEFYCSQCHKQINRLEDLSARL
100 110 120 130 140 150
430 440 450 460 470
pF1KSD -------PTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLE
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDLEMNSPTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVVFLERRVLE
160 170 180 190 200 210
480 490 500 510 520 530
pF1KSD LEKDTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEKDTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMER
220 230 240 250 260 270
540 550 560 570 580 590
pF1KSD EKSIEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKSIEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQE
280 290 300 310 320 330
600 610 620 630 640 650
pF1KSD NKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYH
340 350 360 370 380 390
660 670 680 690 700 710
pF1KSD SRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISSV
400 410 420 430 440 450
720 730 740 750
pF1KSD SRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
:::::::::::::::::::::::::::::::::::::::::
XP_011 SRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
460 470 480 490
>>XP_005255771 (OMIM: 608738) PREDICTED: rab11 family-in (505 aa)
initn: 2096 init1: 2096 opt: 2096 Z-score: 823.0 bits: 162.4 E(85289): 4.2e-39
Smith-Waterman score: 2821; 90.8% identity (91.0% similar) in 501 aa overlap (301-756:5-505)
280 290 300 310 320 330
pF1KSD PDGQCYGGVASAQDEEPLACPDEFDDFVTYEANEVTDSAYMGSESTYSECETFTDEDTST
.:::::::::::::::::::::::::::::
XP_005 MPFLKANEVTDSAYMGSESTYSECETFTDEDTST
10 20 30
340 350 360 370 380 390
pF1KSD LVHPELQPEGDADSAGGSAVPSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVHPELQPEGDADSAGGSAVPSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHF
40 50 60 70 80 90
400 410 420
pF1KSD EDYGEGSEAELSPETLCNGQLGCSDPAFLTPS----------------------------
::::::::::::::::::::::::::::::::
XP_005 EDYGEGSEAELSPETLCNGQLGCSDPAFLTPSTDPLAAKLHSILTDEAFEFYCSQCHKQI
100 110 120 130 140 150
430 440 450 460
pF1KSD -----------------PTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADK
:::::::::::::::::::::::::::::::::::::::::::
XP_005 NRLEDLSARLSDLEMNSPTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADK
160 170 180 190 200 210
470 480 490 500 510 520
pF1KSD VVFLERRVLELEKDTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVFLERRVLELEKDTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRR
220 230 240 250 260 270
530 540 550 560 570 580
pF1KSD QKELLCKMEREKSIEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKELLCKMEREKSIEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIES
280 290 300 310 320 330
590 600 610 620 630 640
pF1KSD LTLRLSEEQENKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LTLRLSEEQENKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGR
340 350 360 370 380 390
650 660 670 680 690 700
pF1KSD SSSMGLQEYHSRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSSMGLQEYHSRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFS
400 410 420 430 440 450
710 720 730 740 750
pF1KSD ESLAAEISSVSRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESLAAEISSVSRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
460 470 480 490 500
756 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:36:28 2016 done: Thu Nov 3 02:36:30 2016
Total Scan time: 14.830 Total Display time: 0.160
Function used was FASTA [36.3.4 Apr, 2011]