Result of FASTA (ccds) for
pF1KSDA0679
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0679, 916 aa
1>>>pF1KSDA0679 916 - 916 aa - 916 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7873+/-0.000916; mu= 15.4802+/- 0.056
mean_var=106.1105+/-21.302, 0's: 0 Z-trim(109.1): 13 B-trim: 110 in 1/49
Lambda= 0.124507
statistics sampled from 10653 (10659) to 10653 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.327), width: 16
Scan time: 4.660
The best scores are: opt bits E(32554)
CCDS7520.1 MGEA5 gene_id:10724|Hs108|chr10 ( 916) 6144 1114.6 0
CCDS44471.1 MGEA5 gene_id:10724|Hs108|chr10 ( 863) 3477 635.6 1.2e-181
>>CCDS7520.1 MGEA5 gene_id:10724|Hs108|chr10 (916 aa)
initn: 6144 init1: 6144 opt: 6144 Z-score: 5963.2 bits: 1114.6 E(32554): 0
Smith-Waterman score: 6144; 100.0% identity (100.0% similar) in 916 aa overlap (1-916:1-916)
10 20 30 40 50 60
pF1KSD MVQKESQATLEERESELSSNPAASAGASLEPPAAPAPGEDNPAGAGGAAVAGAAGGARRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MVQKESQATLEERESELSSNPAASAGASLEPPAAPAPGEDNPAGAGGAAVAGAAGGARRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD CAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD TELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PSLNATTVVTTVYQEPIMSQGAALSGEPTTLTKEEEKKQPDEEPMDMVVEKQEETDHKND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PSLNATTVVTTVYQEPIMSQGAALSGEPTTLTKEEEKKQPDEEPMDMVVEKQEETDHKND
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NQILSEIVEAKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NQILSEIVEAKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD GPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD SEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQW
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD LGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPY
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD FPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD LGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD SLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIA
850 860 870 880 890 900
910
pF1KSD KMEGFPKDVVILGRSL
::::::::::::::::
CCDS75 KMEGFPKDVVILGRSL
910
>>CCDS44471.1 MGEA5 gene_id:10724|Hs108|chr10 (863 aa)
initn: 3477 init1: 3477 opt: 3477 Z-score: 3374.5 bits: 635.6 E(32554): 1.2e-181
Smith-Waterman score: 5687; 94.2% identity (94.2% similar) in 916 aa overlap (1-916:1-863)
10 20 30 40 50 60
pF1KSD MVQKESQATLEERESELSSNPAASAGASLEPPAAPAPGEDNPAGAGGAAVAGAAGGARRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MVQKESQATLEERESELSSNPAASAGASLEPPAAPAPGEDNPAGAGGAAVAGAAGGARRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD CAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD TELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLE
:::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVM---------------
310 320 330 340
370 380 390 400 410 420
pF1KSD NEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAA
::::::::::::::::::::::
CCDS44 --------------------------------------SRQVAHSGAKASVVDGTPLVAA
350 360
430 440 450 460 470 480
pF1KSD PSLNATTVVTTVYQEPIMSQGAALSGEPTTLTKEEEKKQPDEEPMDMVVEKQEETDHKND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PSLNATTVVTTVYQEPIMSQGAALSGEPTTLTKEEEKKQPDEEPMDMVVEKQEETDHKND
370 380 390 400 410 420
490 500 510 520 530 540
pF1KSD NQILSEIVEAKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NQILSEIVEAKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVP
430 440 450 460 470 480
550 560 570 580 590 600
pF1KSD GPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKD
490 500 510 520 530 540
610 620 630 640 650 660
pF1KSD SEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQW
550 560 570 580 590 600
670 680 690 700 710 720
pF1KSD LGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPY
610 620 630 640 650 660
730 740 750 760 770 780
pF1KSD FPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYA
670 680 690 700 710 720
790 800 810 820 830 840
pF1KSD LGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFP
730 740 750 760 770 780
850 860 870 880 890 900
pF1KSD SLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIA
790 800 810 820 830 840
910
pF1KSD KMEGFPKDVVILGRSL
::::::::::::::::
CCDS44 KMEGFPKDVVILGRSL
850 860
916 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:38:54 2016 done: Thu Nov 3 18:38:54 2016
Total Scan time: 4.660 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]