(Circular) (Six-base) MAPSORT of: pF1KSDA0690.seq Check: 4432 from: 1 to: 6730 pF1KSDA0690 6730 bp With 182 enzymes: SgfI * June 20, 2008 10:33 .. AccI GT'mk_AC Cuts at: 3711 3766 3711 Size: 55 6675 Acc65I G'GTAC_C Cuts at: 403 3744 403 Size: 3341 3389 AclI AA'CG_TT Cuts at: 6570 6570 Size: 6730 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 234 429 778 1174 1633 1886 2296 4553 4985 Size: 195 349 396 459 253 410 2257 432 Cuts at: 4985 5734 6002 234 Size: 749 268 962 Fragments arranged by size: 2257 962 749 459 432 410 396 349 268 253 195 AfeI AGC'GCT Cuts at: 175 460 175 Size: 285 6445 AflII C'TTAA_G Cuts at: 997 997 Size: 6730 AflIII A'CryG_T Cuts at: 2766 4080 5186 6163 2766 Size: 1314 1106 977 3333 Fragments arranged by size: 3333 1314 1106 977 AgeI A'CCGG_T Cuts at: 5118 5118 Size: 6730 AleI CACnn'nnGTG Cuts at: 523 1680 523 Size: 1157 5573 AlwNI CAG_nnn'CTG Cuts at: 1216 1305 1371 1818 1855 2655 2737 4033 5602 Size: 89 66 447 37 800 82 1296 1569 Cuts at: 5602 1216 Size: 2344 Fragments arranged by size: 2344 1569 1296 800 447 89 82 66 37 ApaI G_GGCC'C Cuts at: 2239 2247 2239 Size: 8 6722 ApaLI G'TGCA_C Cuts at: 2418 5500 2418 Size: 3082 3648 ApoI r'AATT_y Cuts at: 628 1270 3732 6083 6339 628 Size: 642 2462 2351 256 1019 Fragments arranged by size: 2462 2351 1019 642 256 AseI AT'TA_AT Cuts at: 20 20 Size: 6730 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6730 AvaI C'yCGr_G Cuts at: 135 399 2239 2899 2945 3748 135 Size: 264 1840 660 46 803 3117 Fragments arranged by size: 3117 1840 803 660 264 46 BamHI G'GATC_C Cuts at: 3189 3570 3753 3189 Size: 381 183 6166 Fragments arranged by size: 6166 381 183 BanI G'GyrC_C Cuts at: 403 2957 3334 3744 4158 4406 4441 403 Size: 2554 377 410 414 248 35 2692 Fragments arranged by size: 2692 2554 414 410 377 248 35 BanII G_rGCy'C Cuts at: 923 1291 2239 2247 2967 3020 3176 3742 4772 Size: 368 948 8 720 53 156 566 1030 Cuts at: 4772 923 Size: 2881 Fragments arranged by size: 2881 1030 948 720 566 368 156 53 8 BbeI G_GCGC'C Cuts at: 4162 4410 4162 Size: 248 6482 BbsI GAAGACnn'nnnn_ Cuts at: 1305 2287 1305 Size: 982 5748 BbvCI CC'TCA_GC Cuts at: 2939 3428 2939 Size: 489 6241 BciVI GTATCCnnnnn_n' Cuts at: 4626 5389 6730 4626 Size: 763 1341 4626 Fragments arranged by size: 4626 1341 763 BclI T'GATC_A Cuts at: 3287 3380 4248 3287 Size: 93 868 5769 Fragments arranged by size: 5769 868 93 BglI GCCn_nnn'nGGC Cuts at: 865 2558 3502 865 Size: 1693 944 4093 Fragments arranged by size: 4093 1693 944 BglII A'GATC_T Cuts at: 494 1664 4243 6282 494 Size: 1170 2579 2039 942 Fragments arranged by size: 2579 2039 1170 942 BlpI GC'TnA_GC Cuts at: 3840 3840 Size: 6730 Bme1580I G_kGCm'C Cuts at: 2239 2247 2422 4353 4446 5504 2239 Size: 8 175 1931 93 1058 3465 Fragments arranged by size: 3465 1931 1058 175 93 8 BmgBI CAC'GTC Cuts at: 2697 2748 2697 Size: 51 6679 BmrI ACTGGGnnnn_n' Cuts at: 956 2722 3940 4021 4356 6502 956 Size: 1766 1218 81 335 2146 1184 Fragments arranged by size: 2146 1766 1218 1184 335 81 BmtI G_CTAG'C Cuts at: 991 991 Size: 6730 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 414 492 5095 414 Size: 78 4603 2049 Fragments arranged by size: 4603 2049 78 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 731 1305 1348 1663 1928 2230 2287 2677 3463 Size: 574 43 315 265 302 57 390 786 Cuts at: 3463 3488 731 Size: 25 3973 Fragments arranged by size: 3973 786 574 390 315 302 265 57 43 25 Bpu10I CC'TnA_GC Cuts at: 901 1637 2939 2968 3428 901 Size: 736 1302 29 460 4203 Fragments arranged by size: 4203 1302 736 460 29 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 601 852 1126 3394 3904 4783 5277 5575 601 Size: 251 274 2268 510 879 494 298 1756 Fragments arranged by size: 2268 1756 879 510 494 298 274 251 BsaI GGTCTCn'nnnn_ Cuts at: 1541 6434 1541 Size: 4893 1837 BsaAI yAC'GTr Cuts at: 3720 4081 3720 Size: 361 6369 BsaBI GATnn'nnATC Cuts at: 6 4242 6281 6 Size: 4236 2039 455 Fragments arranged by size: 4236 2039 455 BsaHI Gr'CG_yC Cuts at: 355 4159 4407 5111 6607 355 Size: 3804 248 704 1496 478 Fragments arranged by size: 3804 1496 704 478 248 BsaWI w'CCGG_w Cuts at: 581 2930 3917 4438 5118 5392 5539 5950 581 Size: 2349 987 521 680 274 147 411 1361 Fragments arranged by size: 2349 1361 987 680 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 547 577 1174 1204 2203 2233 2650 2680 547 Size: 30 597 30 999 30 417 30 4597 Fragments arranged by size: 4597 999 597 417 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 805 1191 1267 1516 2227 2301 2917 3001 3013 Size: 386 76 249 711 74 616 84 12 Cuts at: 3013 3016 3019 3022 3025 3028 3061 3088 3100 Size: 3 3 3 3 3 33 27 12 Cuts at: 3100 3103 3150 3313 3445 3448 3451 805 Size: 3 47 163 132 3 3 4084 Fragments arranged by size: 4084 711 616 386 249 163 132 84 76 74 47 33 27 12 12 3 3 3 3 3 3 3 3 BseYI C'CCAG_C Cuts at: 593 1764 4153 4911 5490 5986 593 Size: 1171 2389 758 579 496 1337 Fragments arranged by size: 2389 1337 1171 758 579 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 414 724 1698 2206 2275 2693 2791 414 Size: 310 974 508 69 418 98 4353 Fragments arranged by size: 4353 974 508 418 310 98 69 BsiEI CG_ry'CG Cuts at: 104 259 3568 4270 4316 5526 104 Size: 155 3309 702 46 1210 1308 Fragments arranged by size: 3309 1308 1210 702 155 46 BsiHKAI G_wGCw'C Cuts at: 907 923 1291 2048 2308 2422 3742 4520 4710 Size: 16 368 757 260 114 1320 778 190 Cuts at: 4710 5504 907 Size: 794 2133 Fragments arranged by size: 2133 1320 794 778 757 368 260 190 114 16 BsmI GAATG_Cn' Cuts at: 1165 3479 1165 Size: 2314 4416 BsmBI CGTCTCn'nnnn_ Cuts at: 346 544 346 Size: 198 6532 Bsp1286I G_dGCh'C Cuts at: 907 923 1291 2048 2239 2247 2308 2422 2967 Size: 16 368 757 191 8 61 114 545 Cuts at: 2967 3020 3176 3742 4353 4446 4520 4710 4772 Size: 53 156 566 611 93 74 190 62 Cuts at: 4772 5504 907 Size: 732 2133 Fragments arranged by size: 2133 757 732 611 566 545 368 191 190 156 114 93 74 62 61 53 16 8 BspEI T'CCGG_A Cuts at: 581 2930 5950 581 Size: 2349 3020 1361 Fragments arranged by size: 3020 2349 1361 BspHI T'CATG_A Cuts at: 824 5906 824 Size: 5082 1648 BspMI ACCTGCnnnn'nnnn_ Cuts at: 773 1099 1388 3778 3992 4294 4675 773 Size: 326 289 2390 214 302 381 2828 Fragments arranged by size: 2828 2390 381 326 302 289 214 BsrBI CCG'CTC Cuts at: 50 5020 5074 6560 6725 50 Size: 4970 54 1486 165 55 Fragments arranged by size: 4970 1486 165 55 54 BsrDI GCAATG_nn' Cuts at: 4640 4640 Size: 6730 BsrFI r'CCGG_y Cuts at: 254 3281 3563 4726 4907 5118 254 Size: 3027 282 1163 181 211 1866 Fragments arranged by size: 3027 1866 1163 282 211 181 BssSI C'ACGA_G Cuts at: 2467 4999 5359 2467 Size: 2532 360 3838 Fragments arranged by size: 3838 2532 360 BstAPI GCAn_nnn'nTGC Cuts at: 1476 4105 1476 Size: 2629 4101 BstBI TT'CG_AA Cuts at: 110 110 Size: 6730 BstEII G'GTnAC_C Cuts at: 1086 1440 1800 2565 1086 Size: 354 360 765 5251 Fragments arranged by size: 5251 765 360 354 BstXI CCAn_nnnn'nTGG Cuts at: 1526 1632 2643 1526 Size: 106 1011 5613 Fragments arranged by size: 5613 1011 106 BstYI r'GATC_y Cuts at: 1 494 1148 1664 3189 3570 3753 4220 4243 Size: 493 654 516 1525 381 183 467 23 Cuts at: 4243 4578 4824 5838 5924 5936 6282 1 Size: 335 246 1014 86 12 346 449 Fragments arranged by size: 1525 1014 654 516 493 467 449 381 346 335 246 183 86 23 12 Bsu36I CC'TnA_GG Cuts at: 817 1209 1457 1795 2231 2491 817 Size: 392 248 338 436 260 5056 Fragments arranged by size: 5056 436 392 338 260 248 BtgI C'CryG_G Cuts at: 125 359 1519 1625 1925 2178 2570 2981 125 Size: 234 1160 106 300 253 392 411 3874 Fragments arranged by size: 3874 1160 411 392 300 253 234 106 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 3469 4678 4859 5022 3469 Size: 1209 181 163 5177 Fragments arranged by size: 5177 1209 181 163 BtsI GCAGTG_nn' Cuts at: 630 674 810 1045 1253 1433 2284 2390 2461 Size: 44 136 235 208 180 851 106 71 Cuts at: 2461 2530 2738 3971 630 Size: 69 208 1233 3389 Fragments arranged by size: 3389 1233 851 235 208 208 180 136 106 71 69 44 DraI TTT'AAA Cuts at: 2619 3727 2619 Size: 1108 5622 DraIII CAC_nnn'GTG Cuts at: 1347 1808 2184 2355 1347 Size: 461 376 171 5722 Fragments arranged by size: 5722 461 376 171 DrdI GACnn_nn'nnGTC Cuts at: 280 1798 4434 5294 280 Size: 1518 2636 860 1716 Fragments arranged by size: 2636 1716 1518 860 EaeI y'GGCC_r Cuts at: 256 1733 1772 2759 3215 3279 3494 3565 4313 Size: 1477 39 987 456 64 215 71 748 Cuts at: 4313 4487 4878 4905 6252 256 Size: 174 391 27 1347 734 Fragments arranged by size: 1477 1347 987 748 734 456 391 215 174 71 64 39 27 EagI C'GGCC_G Cuts at: 256 3565 4313 256 Size: 3309 748 2673 Fragments arranged by size: 3309 2673 748 EarI CTCTTCn'nnn_ Cuts at: 362 790 886 1609 1909 2254 2507 2990 3320 Size: 428 96 723 300 345 253 483 330 Cuts at: 3320 3347 4751 4961 362 Size: 27 1404 210 2131 Fragments arranged by size: 2131 1404 723 483 428 345 330 300 253 210 96 27 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 388 4936 5248 5394 6540 388 Size: 4548 312 146 1146 578 Fragments arranged by size: 4548 1146 578 312 146 EcoICRI GAG'CTC Cuts at: 921 1289 3740 921 Size: 368 2451 3911 Fragments arranged by size: 3911 2451 368 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 234 429 731 778 1174 1305 1348 1633 1663 Size: 195 302 47 396 131 43 285 30 Cuts at: 1663 1886 1928 2230 2287 2296 2677 3463 3488 Size: 223 42 302 57 9 381 786 25 Cuts at: 3488 4553 4985 5734 6002 234 Size: 1065 432 749 268 962 Fragments arranged by size: 1065 962 786 749 432 396 381 302 302 285 268 223 195 131 57 47 43 42 30 25 9 EcoNI CCTnn'n_nnAGG Cuts at: 1636 2971 3655 1636 Size: 1335 684 4711 Fragments arranged by size: 4711 1335 684 EcoO109I rG'GnC_Cy Cuts at: 320 645 762 1044 1213 1257 1453 1815 2235 Size: 325 117 282 169 44 196 362 420 Cuts at: 2235 2236 2243 2244 2271 2327 2517 3867 320 Size: 1 7 1 27 56 190 1350 3183 Fragments arranged by size: 3183 1350 420 362 325 282 196 190 169 117 56 44 27 7 1 1 EcoRI G'AATT_C Cuts at: 628 3732 628 Size: 3104 3626 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 4747 4747 Size: 6730 FseI GG_CCGG'CC Cuts at: 3567 3567 Size: 6730 FspI TGC'GCA Cuts at: 1822 4509 1822 Size: 2687 4043 HaeII r_GCGC'y Cuts at: 177 462 3275 4162 4410 5434 6413 177 Size: 285 2813 887 248 1024 979 494 Fragments arranged by size: 2813 1024 979 887 494 285 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 298 330 1174 1206 2066 2098 2906 2938 3438 Size: 32 844 32 860 32 808 32 500 Cuts at: 3438 3470 4570 4600 4602 4632 298 Size: 32 1100 30 2 30 2396 Fragments arranged by size: 2396 1100 860 844 808 500 32 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 2925 3712 3767 2925 Size: 787 55 5888 Fragments arranged by size: 5888 787 55 HindIII A'AGCT_T Cuts at: 2797 2833 2797 Size: 36 6694 KasI G'GCGC_C Cuts at: 4158 4406 4158 Size: 248 6482 KpnI G_GTAC'C Cuts at: 407 3748 407 Size: 3341 3389 MluI A'CGCG_T Cuts at: 6163 6163 Size: 6730 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 449 497 5401 5585 449 Size: 48 4904 184 1594 Fragments arranged by size: 4904 1594 184 48 MscI TGG'CCA Cuts at: 1735 1774 2761 3217 3496 4489 1735 Size: 39 987 456 279 993 3976 Fragments arranged by size: 3976 993 987 456 279 39 MslI CAynn'nnrTG Cuts at: 523 1680 2725 2746 4717 4844 523 Size: 1157 1045 21 1971 127 2409 Fragments arranged by size: 2409 1971 1157 1045 127 21 MspA1I CmG'CkG Cuts at: 1302 2371 2579 2652 2775 3117 3839 4153 4513 Size: 1069 208 73 123 342 722 314 360 Cuts at: 4513 5528 5773 1302 Size: 1015 245 2259 Fragments arranged by size: 2259 1069 1015 722 360 342 314 245 208 123 73 NaeI GCC'GGC Cuts at: 256 3283 3565 4909 256 Size: 3027 282 1344 2077 Fragments arranged by size: 3027 2077 1344 282 NarI GG'CG_CC Cuts at: 4159 4407 4159 Size: 248 6482 NcoI C'CATG_G Cuts at: 125 359 1625 2570 125 Size: 234 1266 945 4285 Fragments arranged by size: 4285 1266 945 234 NgoMIV G'CCGG_C Cuts at: 254 3281 3563 4907 254 Size: 3027 282 1344 2077 Fragments arranged by size: 3027 2077 1344 282 NheI G'CTAG_C Cuts at: 987 987 Size: 6730 NruI TCG'CGA Cuts at: 5091 5091 Size: 6730 NspI r_CATG'y Cuts at: 747 2770 2814 3781 4281 5190 747 Size: 2023 44 967 500 909 2287 Fragments arranged by size: 2287 2023 967 909 500 44 PasI CC'CwG_GG Cuts at: 537 3024 537 Size: 2487 4243 PciI A'CATG_T Cuts at: 2766 5186 2766 Size: 2420 4310 PflMI CCAn_nnn'nTGG Cuts at: 843 1428 843 Size: 585 6145 PfoI T'CCnGG_A Cuts at: 692 779 2021 2084 3185 692 Size: 87 1242 63 1101 4237 Fragments arranged by size: 4237 1242 1101 87 63 PmeI GTTT'AAAC Cuts at: 3727 3727 Size: 6730 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1538 1570 5869 5901 1538 Size: 32 4299 32 2367 Fragments arranged by size: 4299 2367 32 32 PpuMI rG'GwC_Cy Cuts at: 320 762 1044 1453 2271 320 Size: 442 282 409 818 4779 Fragments arranged by size: 4779 818 442 409 282 PshAI GACnn'nnGTC Cuts at: 2572 2572 Size: 6730 PspOMI G'GGCC_C Cuts at: 2235 2243 2235 Size: 8 6722 PstI C_TGCA'G Cuts at: 314 805 1472 2525 2584 3635 3775 4460 314 Size: 491 667 1053 59 1051 140 685 2584 Fragments arranged by size: 2584 1053 1051 685 667 491 140 59 PvuI CG_AT'CG Cuts at: 104 104 Size: 6730 PvuII CAG'CTG Cuts at: 1302 2371 2579 2652 2775 4153 4513 1302 Size: 1069 208 73 123 1378 360 3519 Fragments arranged by size: 3519 1378 1069 360 208 123 73 RsrII CG'GwC_CG Cuts at: 4923 4923 Size: 6730 SacI G_AGCT'C Cuts at: 923 1291 3742 923 Size: 368 2451 3911 Fragments arranged by size: 3911 2451 368 SalI G'TCGA_C Cuts at: 3710 3765 3710 Size: 55 6675 SapI GCTCTTCn'nnn_ Cuts at: 790 1609 4751 4961 790 Size: 819 3142 210 2559 Fragments arranged by size: 3142 2559 819 210 SbfI CC_TGCA'GG Cuts at: 3775 3775 Size: 6730 ScaI AGT'ACT Cuts at: 565 6247 565 Size: 5682 1048 SexAI A'CCwGG_T Cuts at: 1025 2090 1025 Size: 1065 5665 SfcI C'TryA_G Cuts at: 33 310 801 1468 1724 2521 2580 3631 3771 Size: 277 491 667 256 797 59 1051 140 Cuts at: 3771 4456 5451 5642 33 Size: 685 995 191 1121 Fragments arranged by size: 1121 1051 995 797 685 667 491 277 256 191 140 59 SfoI GGC'GCC Cuts at: 4160 4408 4160 Size: 248 6482 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6730 SmaI CCC'GGG Cuts at: 2241 2947 3750 2241 Size: 706 803 5221 Fragments arranged by size: 5221 803 706 SmlI C'TyrA_G Cuts at: 616 831 997 1141 3409 3883 4798 5292 5554 Size: 215 166 144 2268 474 915 494 262 Cuts at: 5554 616 Size: 1792 Fragments arranged by size: 2268 1792 915 494 474 262 215 166 144 SnaBI TAC'GTA Cuts at: 3720 3720 Size: 6730 SpeI A'CTAG_T Cuts at: 67 67 Size: 6730 SphI G_CATG'C Cuts at: 3781 4281 3781 Size: 500 6230 SrfI GCCC'GGGC Cuts at: 2947 2947 Size: 6730 StuI AGG'CCT Cuts at: 788 868 894 1722 2197 3650 788 Size: 80 26 828 475 1453 3868 Fragments arranged by size: 3868 1453 828 475 80 26 StyI C'CwwG_G Cuts at: 125 359 719 1625 1835 2102 2423 2570 3194 Size: 234 360 906 210 267 321 147 624 Cuts at: 3194 3862 4216 125 Size: 668 354 2639 Fragments arranged by size: 2639 906 668 624 360 354 321 267 234 210 147 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 4311 4444 4903 5114 4311 Size: 133 459 211 5927 Fragments arranged by size: 5927 459 211 133 TatI w'GTAC_w Cuts at: 453 563 2638 6245 453 Size: 110 2075 3607 938 Fragments arranged by size: 3607 2075 938 110 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 1070 1102 1445 1477 2203 2235 2650 2682 6247 Size: 32 343 32 726 32 415 32 3565 Cuts at: 6247 6279 1070 Size: 32 1521 Fragments arranged by size: 3565 1521 726 415 343 32 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 2092 2698 4525 2092 Size: 606 1827 4297 Fragments arranged by size: 4297 1827 606 XbaI T'CTAG_A Cuts at: 3759 3759 Size: 6730 XcmI CCAnnnn_n'nnnnTGG Cuts at: 892 4223 892 Size: 3331 3399 XmaI C'CCGG_G Cuts at: 2239 2945 3748 2239 Size: 706 803 5221 Fragments arranged by size: 5221 803 706 XmnI GAAnn'nnTTC Cuts at: 2845 2845 Size: 6730 Enzymes that do cut: AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AleI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FseI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NheI NruI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PspOMI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SexAI SfcI SfoI SgfI SmaI SmlI SnaBI SpeI SphI SrfI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI Enzymes that do not cut: AarI AatII AhdI AlfI AloI AscI AvrII BaeI BcgI BfrBI BsiWI BsrGI BssHII BstZ17I ClaI CspCI EcoRV FspAI HpaI MfeI NdeI NotI NsiI PacI PmlI PsiI PspXI PsrI SacII SanDI SfiI SgrAI SspI SwaI XhoI ZraI