Result of FASTA (ccds) for
pF1KSDA0693
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0693, 396 aa
1>>>pF1KSDA0693 396 - 396 aa - 396 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4131+/-0.00115; mu= -5.9677+/- 0.068
mean_var=256.5113+/-53.591, 0's: 0 Z-trim(111.4): 51 B-trim: 286 in 1/50
Lambda= 0.080079
statistics sampled from 12306 (12344) to 12306 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.379), width: 16
Scan time: 2.620
The best scores are: opt bits E(32554)
CCDS13491.1 SS18L1 gene_id:26039|Hs108|chr20 ( 396) 2700 324.9 7.9e-89
CCDS32807.1 SS18 gene_id:6760|Hs108|chr18 ( 418) 880 114.7 1.6e-25
CCDS54183.1 SS18 gene_id:6760|Hs108|chr18 ( 387) 825 108.3 1.3e-23
CCDS77168.1 SS18 gene_id:6760|Hs108|chr18 ( 395) 779 103.0 5.1e-22
>>CCDS13491.1 SS18L1 gene_id:26039|Hs108|chr20 (396 aa)
initn: 2700 init1: 2700 opt: 2700 Z-score: 1708.2 bits: 324.9 E(32554): 7.9e-89
Smith-Waterman score: 2700; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)
10 20 30 40 50 60
pF1KSD MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYDRSFEESTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYDRSFEESTQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD HYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAPSQYPGYQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAPSQYPGYQQ
310 320 330 340 350 360
370 380 390
pF1KSD GQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ
::::::::::::::::::::::::::::::::::::
CCDS13 GQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ
370 380 390
>>CCDS32807.1 SS18 gene_id:6760|Hs108|chr18 (418 aa)
initn: 688 init1: 563 opt: 880 Z-score: 571.5 bits: 114.7 E(32554): 1.6e-25
Smith-Waterman score: 1671; 59.9% identity (78.3% similar) in 419 aa overlap (1-396:1-418)
10 20 30 40 50 60
pF1KSD MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY
::::::. : :::::.: .::::::.:.::::::.. :.::::.::.::::.:: ::::
CCDS32 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQ
::::::::::::::::::::::: .:::...::: .:.. ::.. : ::. .:
CCDS32 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
70 80 90 100 110 120
130 140 150 160
pF1KSD GQIGN---GPSHVSMQQTAPNTLPTTSMSISGP--------GYSHAGPASQGVPMQGQGT
.:... ::.:. :: .:: : :. :.. : ::.:. :.::..:.:.: :
CCDS32 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD I------GNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSS-IAMMGQGSQ
. ::: : :..:: : ::.:: ...:. :::.::::::. ..:::: .:
CCDS32 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD GSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHS-QGAAEPMGQQYYPDGHGDYAY
:. ::::: . :::: ::: ::: :::.:::.::::. :: : :.::::::::.::.:
CCDS32 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY
250 260 270 280 290 300
290 300 310 320 330
pF1KSD QQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTY--SQQQYPSQQSYP
:: :: ::.::: .:.:.:::::::::::.::: .:: : :: : .:::::.::.::
CCDS32 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQ-GPPPQQGYPPQQQQYPGQQGYP
310 320 330 340 350
340 350 360 370 380 390
pF1KSD GQQQGYGSAQGAPS-QYPGYQQGQGQQYGSYRAPQTAP-SAQQQRPYGYEQGQYGNYQQ
::::::: .::.:. :::.: ::::::::.:: : .: . :::::::.:::::::::
CCDS32 GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
360 370 380 390 400 410
>>CCDS54183.1 SS18 gene_id:6760|Hs108|chr18 (387 aa)
initn: 932 init1: 561 opt: 825 Z-score: 537.7 bits: 108.3 E(32554): 1.3e-23
Smith-Waterman score: 1431; 54.7% identity (71.6% similar) in 419 aa overlap (1-396:1-387)
10 20 30 40 50 60
pF1KSD MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY
::::::. : :::::.: .::::::.:.::::::.. :.::::.::.::::.:: ::::
CCDS54 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQ
::::::::::::::::::::::: .:::...::: .:.. ::.. : ::. .:
CCDS54 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
70 80 90 100 110 120
130 140 150 160
pF1KSD GQIGN---GPSHVSMQQTAPNTLPTTSMSISGP--------GYSHAGPASQGVPMQGQGT
.:... ::.:. :: .:: : :. :.. : ::.:. :.::..:.:.: :
CCDS54 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD I------GNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSS-IAMMGQGSQ
. ::: : :..:: : ::.:: ...:. :::.::::::. ..:::: .:
CCDS54 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD GSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHS-QGAAEPMGQQYYPDGHGDYAY
:. ::::: . :::: ::: ::: :::.:::.::::. :: : :.:::::::
CCDS54 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG------
250 260 270 280 290
290 300 310 320 330
pF1KSD QQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTY--SQQQYPSQQSYP
::::.::: .:: : :: : .:::::.::.::
CCDS54 -------------------------NSQYGQQQDAYQ-GPPPQQGYPPQQQQYPGQQGYP
300 310 320
340 350 360 370 380 390
pF1KSD GQQQGYGSAQGAPS-QYPGYQQGQGQQYGSYRAPQTAP-SAQQQRPYGYEQGQYGNYQQ
::::::: .::.:. :::.: ::::::::.:: : .: . :::::::.:::::::::
CCDS54 GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
330 340 350 360 370 380
>>CCDS77168.1 SS18 gene_id:6760|Hs108|chr18 (395 aa)
initn: 587 init1: 462 opt: 779 Z-score: 508.8 bits: 103.0 E(32554): 5.1e-22
Smith-Waterman score: 1570; 59.3% identity (78.0% similar) in 396 aa overlap (24-396:1-395)
10 20 30 40 50 60
pF1KSD MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY
:::.:.::::::.. :.::::.::.::::.:: ::::
CCDS77 MLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
10 20 30
70 80 90 100 110 120
pF1KSD LATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQ
::::::::::::::::::::::: .:::...::: .:.. ::.. : ::. .:
CCDS77 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
40 50 60 70 80 90
130 140 150 160
pF1KSD GQIGN---GPSHVSMQQTAPNTLPTTSMSISGP--------GYSHAGPASQGVPMQGQGT
.:... ::.:. :: .:: : :. :.. : ::.:. :.::..:.:.: :
CCDS77 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
100 110 120 130 140 150
170 180 190 200 210 220
pF1KSD I------GNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSS-IAMMGQGSQ
. ::: : :..:: : ::.:: ...:. :::.::::::. ..:::: .:
CCDS77 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
160 170 180 190 200 210
230 240 250 260 270 280
pF1KSD GSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHS-QGAAEPMGQQYYPDGHGDYAY
:. ::::: . :::: ::: ::: :::.:::.::::. :: : :.::::::::.::.:
CCDS77 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY
220 230 240 250 260 270
290 300 310 320 330
pF1KSD QQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTY--SQQQYPSQQSYP
:: :: ::.::: .:.:.:::::::::::.::: .:: : :: : .:::::.::.::
CCDS77 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQ-GPPPQQGYPPQQQQYPGQQGYP
280 290 300 310 320 330
340 350 360 370 380 390
pF1KSD GQQQGYGSAQGAPS-QYPGYQQGQGQQYGSYRAPQTAP-SAQQQRPYGYEQGQYGNYQQ
::::::: .::.:. :::.: ::::::::.:: : .: . :::::::.:::::::::
CCDS77 GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
340 350 360 370 380 390
396 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:42:49 2016 done: Thu Nov 3 02:42:50 2016
Total Scan time: 2.620 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]