FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0753, 967 aa
  1>>>pF1KSDA0753 967 - 967 aa - 967 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9520+/-0.00104; mu= 5.6628+/- 0.062
 mean_var=185.0886+/-36.532, 0's: 0 Z-trim(110.5): 13  B-trim: 11 in 1/51
 Lambda= 0.094272
 statistics sampled from 11651 (11654) to 11651 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.358), width:  16
 Scan time:  4.780

The best scores are:                                      opt bits E(32554)
CCDS42247.1 KIAA0753 gene_id:9851|Hs108|chr17      ( 967) 6375 880.0       0


>>CCDS42247.1 KIAA0753 gene_id:9851|Hs108|chr17           (967 aa)
 initn: 6375 init1: 6375 opt: 6375  Z-score: 4694.5  bits: 880.0 E(32554):    0
Smith-Waterman score: 6375; 99.9% identity (100.0% similar) in 967 aa overlap (1-967:1-967)

               10        20        30        40        50        60
pF1KSD MGPGQPASTCVHLAPRTQLDGRSDPKVLQTQNQLQFNRNVPTHSSNLAIRYSCPHAIRIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGPGQPASTCVHLAPRTQLDGRSDPKVLQTQNQLQFNRNVPTHSSNLAIRYSCPHAIRIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KLKHSYNESYHCKDADCRVGPDLGSSVSFSVISQERLSYAVHLARRDVKRRQFEKHIKEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KLKHSYNESYHCKDADCRVGPDLGSSVSFSVISQERLSYAVHLARRDVKRRQFEKHIKEH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD HLRSQPQSSQKCGHTKYKIPDHRVERKESKSQAACQCSHQPSKVEISSSGAKVYLYSSHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HLRSQPQSSQKCGHTKYKIPDHRVERKESKSQAACQCSHQPSKVEISSSGAKVYLYSSHP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GQSDLTVPNSPPTHDPGLQPHPRIGDHKNISEQKSLLEVQRLQKELSSCIHKIEEVTKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GQSDLTVPNSPPTHDPGLQPHPRIGDHKNISEQKSLLEVQRLQKELSSCIHKIEEVTKKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RLEEALDPDEERRIRIRRQEQAARSARMLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RLEEALDPDEERRIRIRRQEQAARSARMLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SKLAAAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSVKLDADPSVPDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SKLAAAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSVKLDADPSVPDVV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IDILQQIEALESLLEKKLSPKKVKKCFSEIRSRFPIGSQKALERWPSTSPKGERRPLTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IDILQQIEALESLLEKKLSPKKVKKCFSEIRSRFPIGSQKALERWPSTSPKGERRPLTAK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DTFPQETSRPSVAKQLLADKYQPDTELPETQRLQSELDVLDADIVLEEGPFILDQSASFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DTFPQETSRPSVAKQLLADKYQPDTELPETQRLQSELDVLDADIVLEEGPFILDQSASFK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD DEVLAVAKTKAGKKKPVTENVPFRKKDTLAPARQQGLRKAERGRQSQPHSKSRVQQTTVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DEVLAVAKTKAGKKKPVTENVPFRKKDTLAPARQQGLRKAERGRQSQPHSKSRVQQTTVS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SRLKMNRQPVKDRKAPWIPPNPTSPPASPKCAAWLKVKTSPRDATKEPLQQEDPQEESHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SRLKMNRQPVKDRKAPWIPPNPTSPPASPKCAAWLKVKTSPRDATKEPLQQEDPQEESHL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD TGAVEHEAARLAWLDAETSKRLKELEELKAKEIDSMQKQRLDWLDAETSRRTKELNELKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TGAVEHEAARLAWLDAETSKRLKELEELKAKEIDSMQKQRLDWLDAETSRRTKELNELKA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD EEMYRLQQLSVSATHLADKVEEAVLDRLKPLLVKAQRVNSTTEANIHLKDGSSVNTAKAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEMYRLQQLSVSATHLADKVEEAVLDRLKPLLVKAQRVNSTTEANIHLKDGSSVNTAKAQ
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD PAQEVAAVDFESNNIRQLDDFLEDCASELWAVTHAKILGSETLATVEDSKDSPDLEIMMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PAQEVAAVDFESNNIRQLDDFLEDCASELWAVTHAKILGSETLATVEDSKDSPDLEIMMR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD RMEEMEKYQESVRQRYNKIAYADPRLWMQEENNDQKISAIGEKPLSPHPIRITKTVDRKD
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS42 RMEEMEKYQESVRQRYNKIAYADPRLWMQEENNDQKISAISEKPLSPHPIRITKTVDRKD
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD PAVNIMLERPCNGNSLDESVGTEEGSEKREAPLLSLAEDSQQKEGRAPLFVPPGMQHSIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PAVNIMLERPCNGNSLDESVGTEEGSEKREAPLLSLAEDSQQKEGRAPLFVPPGMQHSIG
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD DYCSRFEQYLRIISHEAVGSFNPWLIAESFSEELVDEALGAVAAELQDMCEDYAEAVFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DYCSRFEQYLRIISHEAVGSFNPWLIAESFSEELVDEALGAVAAELQDMCEDYAEAVFTS
              910       920       930       940       950       960

              
pF1KSD EFLEAAT
       :::::::
CCDS42 EFLEAAT
              




967 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:55:14 2016 done: Thu Nov  3 02:55:15 2016
 Total Scan time:  4.780 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]