FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KSDA0753, 967 aa 1>>>pF1KSDA0753 967 - 967 aa - 967 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.9520+/-0.00104; mu= 5.6628+/- 0.062 mean_var=185.0886+/-36.532, 0's: 0 Z-trim(110.5): 13 B-trim: 11 in 1/51 Lambda= 0.094272 statistics sampled from 11651 (11654) to 11651 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.358), width: 16 Scan time: 4.780 The best scores are: opt bits E(32554) CCDS42247.1 KIAA0753 gene_id:9851|Hs108|chr17 ( 967) 6375 880.0 0 >>CCDS42247.1 KIAA0753 gene_id:9851|Hs108|chr17 (967 aa) initn: 6375 init1: 6375 opt: 6375 Z-score: 4694.5 bits: 880.0 E(32554): 0 Smith-Waterman score: 6375; 99.9% identity (100.0% similar) in 967 aa overlap (1-967:1-967) 10 20 30 40 50 60 pF1KSD MGPGQPASTCVHLAPRTQLDGRSDPKVLQTQNQLQFNRNVPTHSSNLAIRYSCPHAIRIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MGPGQPASTCVHLAPRTQLDGRSDPKVLQTQNQLQFNRNVPTHSSNLAIRYSCPHAIRIE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KSD KLKHSYNESYHCKDADCRVGPDLGSSVSFSVISQERLSYAVHLARRDVKRRQFEKHIKEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 KLKHSYNESYHCKDADCRVGPDLGSSVSFSVISQERLSYAVHLARRDVKRRQFEKHIKEH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KSD HLRSQPQSSQKCGHTKYKIPDHRVERKESKSQAACQCSHQPSKVEISSSGAKVYLYSSHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 HLRSQPQSSQKCGHTKYKIPDHRVERKESKSQAACQCSHQPSKVEISSSGAKVYLYSSHP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KSD GQSDLTVPNSPPTHDPGLQPHPRIGDHKNISEQKSLLEVQRLQKELSSCIHKIEEVTKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GQSDLTVPNSPPTHDPGLQPHPRIGDHKNISEQKSLLEVQRLQKELSSCIHKIEEVTKKD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KSD RLEEALDPDEERRIRIRRQEQAARSARMLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 RLEEALDPDEERRIRIRRQEQAARSARMLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAM 250 260 270 280 290 300 310 320 330 340 350 360 pF1KSD SKLAAAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSVKLDADPSVPDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SKLAAAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSVKLDADPSVPDVV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KSD IDILQQIEALESLLEKKLSPKKVKKCFSEIRSRFPIGSQKALERWPSTSPKGERRPLTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 IDILQQIEALESLLEKKLSPKKVKKCFSEIRSRFPIGSQKALERWPSTSPKGERRPLTAK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KSD DTFPQETSRPSVAKQLLADKYQPDTELPETQRLQSELDVLDADIVLEEGPFILDQSASFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 DTFPQETSRPSVAKQLLADKYQPDTELPETQRLQSELDVLDADIVLEEGPFILDQSASFK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KSD DEVLAVAKTKAGKKKPVTENVPFRKKDTLAPARQQGLRKAERGRQSQPHSKSRVQQTTVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 DEVLAVAKTKAGKKKPVTENVPFRKKDTLAPARQQGLRKAERGRQSQPHSKSRVQQTTVS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KSD SRLKMNRQPVKDRKAPWIPPNPTSPPASPKCAAWLKVKTSPRDATKEPLQQEDPQEESHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SRLKMNRQPVKDRKAPWIPPNPTSPPASPKCAAWLKVKTSPRDATKEPLQQEDPQEESHL 550 560 570 580 590 600 610 620 630 640 650 660 pF1KSD TGAVEHEAARLAWLDAETSKRLKELEELKAKEIDSMQKQRLDWLDAETSRRTKELNELKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 TGAVEHEAARLAWLDAETSKRLKELEELKAKEIDSMQKQRLDWLDAETSRRTKELNELKA 610 620 630 640 650 660 670 680 690 700 710 720 pF1KSD EEMYRLQQLSVSATHLADKVEEAVLDRLKPLLVKAQRVNSTTEANIHLKDGSSVNTAKAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 EEMYRLQQLSVSATHLADKVEEAVLDRLKPLLVKAQRVNSTTEANIHLKDGSSVNTAKAQ 670 680 690 700 710 720 730 740 750 760 770 780 pF1KSD PAQEVAAVDFESNNIRQLDDFLEDCASELWAVTHAKILGSETLATVEDSKDSPDLEIMMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 PAQEVAAVDFESNNIRQLDDFLEDCASELWAVTHAKILGSETLATVEDSKDSPDLEIMMR 730 740 750 760 770 780 790 800 810 820 830 840 pF1KSD RMEEMEKYQESVRQRYNKIAYADPRLWMQEENNDQKISAIGEKPLSPHPIRITKTVDRKD ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: CCDS42 RMEEMEKYQESVRQRYNKIAYADPRLWMQEENNDQKISAISEKPLSPHPIRITKTVDRKD 790 800 810 820 830 840 850 860 870 880 890 900 pF1KSD PAVNIMLERPCNGNSLDESVGTEEGSEKREAPLLSLAEDSQQKEGRAPLFVPPGMQHSIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 PAVNIMLERPCNGNSLDESVGTEEGSEKREAPLLSLAEDSQQKEGRAPLFVPPGMQHSIG 850 860 870 880 890 900 910 920 930 940 950 960 pF1KSD DYCSRFEQYLRIISHEAVGSFNPWLIAESFSEELVDEALGAVAAELQDMCEDYAEAVFTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 DYCSRFEQYLRIISHEAVGSFNPWLIAESFSEELVDEALGAVAAELQDMCEDYAEAVFTS 910 920 930 940 950 960 pF1KSD EFLEAAT ::::::: CCDS42 EFLEAAT 967 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 02:55:14 2016 done: Thu Nov 3 02:55:15 2016 Total Scan time: 4.780 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]