Result of FASTA (ccds) for
pF1KSDA0769
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0769, 684 aa
1>>>pF1KSDA0769 684 - 684 aa - 684 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2625+/-0.00111; mu= 3.5372+/- 0.067
mean_var=252.6291+/-52.881, 0's: 0 Z-trim(111.7): 80 B-trim: 338 in 1/51
Lambda= 0.080692
statistics sampled from 12505 (12575) to 12505 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.386), width: 16
Scan time: 4.240
The best scores are: opt bits E(32554)
CCDS8218.2 FCHSD2 gene_id:9873|Hs108|chr11 ( 740) 4511 538.8 1.1e-152
CCDS47295.1 FCHSD1 gene_id:89848|Hs108|chr5 ( 690) 1021 132.5 2.1e-30
>>CCDS8218.2 FCHSD2 gene_id:9873|Hs108|chr11 (740 aa)
initn: 4511 init1: 4511 opt: 4511 Z-score: 2854.8 bits: 538.8 E(32554): 1.1e-152
Smith-Waterman score: 4511; 100.0% identity (100.0% similar) in 684 aa overlap (1-684:57-740)
10 20 30
pF1KSD MQKLASQYLKRDWPGVKADDRNDYRSMYPV
::::::::::::::::::::::::::::::
CCDS82 AKHQAECDLLEDMRTFSQKKAAIEREYAQGMQKLASQYLKRDWPGVKADDRNDYRSMYPV
30 40 50 60 70 80
40 50 60 70 80 90
pF1KSD WKSFLEGTMQVAQSRMNICENYKNFISEPARTVRSLKEQQLKRCVDQLTKIQTELQETVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 WKSFLEGTMQVAQSRMNICENYKNFISEPARTVRSLKEQQLKRCVDQLTKIQTELQETVK
90 100 110 120 130 140
100 110 120 130 140 150
pF1KSD DLAKGKKKYFETEQMAHAVREKADIEAKSKLSLFQSRISLQKASVKLKARRSECNSKATH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DLAKGKKKYFETEQMAHAVREKADIEAKSKLSLFQSRISLQKASVKLKARRSECNSKATH
150 160 170 180 190 200
160 170 180 190 200 210
pF1KSD ARNDYLLTLAAANAHQDRYYQTDLVNIMKALDGNVYDHLKDYLIAFSRTELETCQAVQNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ARNDYLLTLAAANAHQDRYYQTDLVNIMKALDGNVYDHLKDYLIAFSRTELETCQAVQNT
210 220 230 240 250 260
220 230 240 250 260 270
pF1KSD FQFLLENSSKVVRDYNLQLFLQENAVFHKPQPFQFQPCDSDTSRQLESETGTTEEHSLNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FQFLLENSSKVVRDYNLQLFLQENAVFHKPQPFQFQPCDSDTSRQLESETGTTEEHSLNK
270 280 290 300 310 320
280 290 300 310 320 330
pF1KSD EARKWATRVAREHKNIVHQQRVLNDLECHGAAVSEQSRAELEQKIDEARENIRKAEIIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EARKWATRVAREHKNIVHQQRVLNDLECHGAAVSEQSRAELEQKIDEARENIRKAEIIKL
330 340 350 360 370 380
340 350 360 370 380 390
pF1KSD KAEARLDLLKQIGVSVDTWLKSAMNQVMEELENERWARPPAVTSNGTLHSLNADTEREEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KAEARLDLLKQIGVSVDTWLKSAMNQVMEELENERWARPPAVTSNGTLHSLNADTEREEG
390 400 410 420 430 440
400 410 420 430 440 450
pF1KSD EEFEDNMDVFDDSSSSPSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EEFEDNMDVFDDSSSSPSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMED
450 460 470 480 490 500
460 470 480 490 500 510
pF1KSD WVKARNKVGQVGYVPEKYLQFPTSNSLLSMLQSLAALDSRSHTSSNSTEAELVSGSLNGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 WVKARNKVGQVGYVPEKYLQFPTSNSLLSMLQSLAALDSRSHTSSNSTEAELVSGSLNGD
510 520 530 540 550 560
520 530 540 550 560 570
pF1KSD ASVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ASVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE
570 580 590 600 610 620
580 590 600 610 620 630
pF1KSD LSASENGDTPWMREIQISPSPKPHASLPPLPLYDQPPSSPYPSPDKRSSLYFPRSPSANE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LSASENGDTPWMREIQISPSPKPHASLPPLPLYDQPPSSPYPSPDKRSSLYFPRSPSANE
630 640 650 660 670 680
640 650 660 670 680
pF1KSD KSLHAESPGFSQASRHTPETSYGKLRPVRAAPPPPTQNHRRPAEKIEDVEITLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KSLHAESPGFSQASRHTPETSYGKLRPVRAAPPPPTQNHRRPAEKIEDVEITLV
690 700 710 720 730 740
>>CCDS47295.1 FCHSD1 gene_id:89848|Hs108|chr5 (690 aa)
initn: 1070 init1: 337 opt: 1021 Z-score: 659.5 bits: 132.5 E(32554): 2.1e-30
Smith-Waterman score: 1334; 38.0% identity (66.3% similar) in 677 aa overlap (1-667:57-679)
10 20
pF1KSD MQKLASQYLKRDWPGVKADDRNDY-RSMYP
.::::. .:::. : .. . .. :...
CCDS47 TWQQREADLLEDIRSYSKQRAAIEREYGQALQKLAGPFLKRE--GHRSGEMDSRGRTVFG
30 40 50 60 70 80
30 40 50 60 70 80
pF1KSD VWKSFLEGTMQVAQSRMNICENYKNFISEPARTVRSLKEQQLKRCVDQLTKIQTELQETV
.:. .:..:. .:.:.. . :... . : :: ::: :.. ...: . :.:. ..:
CCDS47 AWRCLLDATVAGGQTRLQASDRYRDLA---GGTGRSAKEQVLRKGTENLQRAQAEVLQSV
90 100 110 120 130 140
90 100 110 120 130 140
pF1KSD KDLAKGKKKYFETEQMAHAVREKA-DIEAK---SKLSLFQSRISLQKASVKLKARRSECN
..:....: : . :.. ..::: :..:. : ..:.:: :::: :.::.:. .. .
CCDS47 RELSRSRKLYGQRERVWALAQEKAADVQARLNRSDHGIFHSRTSLQKLSTKLSAQSAQYS
150 160 170 180 190 200
150 160 170 180 190 200
pF1KSD SKATHARNDYLLTLAAANAHQDRYYQTDLVNIMKALDGNVYDHLKDYLIAFSRTELETCQ
.. :::.:::.:.:.::: :.::: .: ..::: ... .::.: : ..:.::::. .
CCDS47 QQLQAARNEYLLNLVATNAHLDHYYQEELPALLKALVSELSEHLRDPLTSLSHTELEAAE
210 220 230 240 250 260
210 220 230 240 250 260
pF1KSD AVQNTFQFLLENSSKVVRDYNLQLFLQENAVFHKPQPFQFQPCDSDTSRQLE-SETGTTE
.. . . ...:.: . .:.::::: .:: : :::: .: :: . :..
CCDS47 VILEHAHRGEQTTSQVSWEQDLKLFLQEPGVFSPTPPQQFQPAGTDQVCVLEWGAEGVAG
270 280 290 300 310 320
270 280 290 300 310 320
pF1KSD EHSLNKEARKWATRVAREHKNIVHQQRVLNDLECHGAAVSEQSRAELEQKIDEARENIRK
. .:.::... ..:.::..: : .:::. :: . .::. .::...:.::.::.
CCDS47 KSGLEKEVQRLTSRAARDYKIQNHGHRVLQRLEQRRQQASEREAPSIEQRLQEVRESIRR
330 340 350 360 370 380
330 340 350 360 370 380
pF1KSD AEIIKLKAEARLDLLKQIGVSVDTWLKSAMNQVMEELENERWARPPAVTSNGTLHSLNAD
:.. ..:. ::: ::. :..:. ::: ::.:...:.:.:: : :. : :
CCDS47 AQVSQVKGAARLALLQGAGLDVERWLKPAMTQAQDEVEQERRLSE-ARLSQRDLSPTAED
390 400 410 420 430 440
390 400 410 420 430 440
pF1KSD TEREEGEEFEDNMDVFDDSSSSPSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIE
.: . :: :.. ..:.. . . .: : : .::. :.:.. ::::: : : :::::
CCDS47 AELSDFEECEETGELFEEPAPQALAT-RALPCPAHVVFRYQAGREDELTITEGEWLEVIE
450 460 470 480 490
450 460 470 480 490 500
pF1KSD DGDMEDWVKARNKVGQVGYVPEKYLQFPTSNSLLSMLQSLAALDSRSHTSSNSTEAELVS
.:: ..::::::. :.::.:::.::.:: ::. .: :. :.: ::
CCDS47 EGDADEWVKARNQHGEVGFVPERYLNFPD----LSLPES-------SQDSDNPCGAE---
500 510 520 530 540
510 520 530 540 550 560
pF1KSD GSLNGDASVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQD--DDGFWEGEFNGRIGV
.. ...:::.: ::. .::::::::.::.: . :: :::::.:::.::.::
CCDS47 ------PTAFLAQALYSYTGQSAEELSFPEGALIRLLPRA-QDGVDDGFWRGEFGGRVGV
550 560 570 580 590
570 580 590 600 610 620
pF1KSD FPSVLVEELSASENGDTPWMREIQISPSPKPHASLPPLP--LYDQPPSSPYPSPDKRSSL
:::.::::: . : :. :::.: . :: : . : ::. :. :: .:
CCDS47 FPSLLVEEL-LGPPGPPELSDPEQMLPSPSPPSFSPPAPTSVLDGPPAPVLPG-DK--AL
600 610 620 630 640 650
630 640 650 660 670 680
pF1KSD YFPRSPSANEKSLHAESPGFSQASRHTPETSYGKLRPVRAAPPPPTQNHRRPAEKIEDVE
:: :: . .: .:::.: ::::..
CCDS47 DFP---------------GFLDM--MAP-----RLRPMRPPPPPPAKAPDPGHPDPLT
660 670 680 690
pF1KSD ITLV
684 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:01:58 2016 done: Thu Nov 3 03:01:59 2016
Total Scan time: 4.240 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]