FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KSDA0775, 615 aa 1>>>pF1KSDA0775 615 - 615 aa - 615 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 14.8826+/-0.00113; mu= -21.6011+/- 0.068 mean_var=637.3152+/-128.534, 0's: 0 Z-trim(118.0): 16 B-trim: 70 in 1/54 Lambda= 0.050804 statistics sampled from 18831 (18840) to 18831 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.579), width: 16 Scan time: 4.160 The best scores are: opt bits E(32554) CCDS45722.1 TBKBP1 gene_id:9755|Hs108|chr17 ( 615) 4260 327.0 4.6e-89 >>CCDS45722.1 TBKBP1 gene_id:9755|Hs108|chr17 (615 aa) initn: 4260 init1: 4260 opt: 4260 Z-score: 1712.4 bits: 327.0 E(32554): 4.6e-89 Smith-Waterman score: 4260; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:1-615) 10 20 30 40 50 60 pF1KSD MESMFEDDISILTQEALGPSEVWLDSPGDPSLGGDMCSASHFALITAYGDIKERLGGLER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MESMFEDDISILTQEALGPSEVWLDSPGDPSLGGDMCSASHFALITAYGDIKERLGGLER 10 20 30 40 50 60 70 80 90 100 110 120 pF1KSD ENATLRRRLKVYEIKYPLISDFGEEHGFSLYEIKDGSLLEVEKVSLQQRLNQFQHELQKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 ENATLRRRLKVYEIKYPLISDFGEEHGFSLYEIKDGSLLEVEKVSLQQRLNQFQHELQKN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KSD KEQEEQLGEMIQAYEKLCVEKSDLETELREMRALVETHLRQICGLEQQLRQQQGLQDAAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KEQEEQLGEMIQAYEKLCVEKSDLETELREMRALVETHLRQICGLEQQLRQQQGLQDAAF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KSD SNLSPPPAPAPPCTDLDLHYLALRGGSGLSHAGWPGSTPSVSDLERRRLEEALEAAQGEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 SNLSPPPAPAPPCTDLDLHYLALRGGSGLSHAGWPGSTPSVSDLERRRLEEALEAAQGEA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KSD RGAQLREEQLQAECERLQGELKQLQETRAQDLASNQSERDMAWVKRVGDDQVNLALAYTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RGAQLREEQLQAECERLQGELKQLQETRAQDLASNQSERDMAWVKRVGDDQVNLALAYTE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KSD LTEELGRLRELSSLQGRILRTLLQEQARSGGQRHSPLSQRHSPAPQCPSPSPPARAAPPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LTEELGRLRELSSLQGRILRTLLQEQARSGGQRHSPLSQRHSPAPQCPSPSPPARAAPPC 310 320 330 340 350 360 370 380 390 400 410 420 pF1KSD PPCQSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPVPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 PPCQSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPVPPS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KSD CPAPQPRPPPPPPPGERTLAERAYAKPPSHHVKAGFQGRRSYSELAEGAAYAGASPPWLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 CPAPQPRPPPPPPPGERTLAERAYAKPPSHHVKAGFQGRRSYSELAEGAAYAGASPPWLQ 430 440 450 460 470 480 490 500 510 520 530 540 pF1KSD AEAATLPKPRAYGSELYGPGRPLSPRRAFEGIRLRFEKQPSEEDEWAVPTSPPSPEVGTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 AEAATLPKPRAYGSELYGPGRPLSPRRAFEGIRLRFEKQPSEEDEWAVPTSPPSPEVGTI 490 500 510 520 530 540 550 560 570 580 590 600 pF1KSD RCASFCAGFPIPESPAATAYAHAEHAQSWPSINLLMETVGSDIRSCPLCQLGFPVGYPDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RCASFCAGFPIPESPAATAYAHAEHAQSWPSINLLMETVGSDIRSCPLCQLGFPVGYPDD 550 560 570 580 590 600 610 pF1KSD ALIKHIDSHLENSKI ::::::::::::::: CCDS45 ALIKHIDSHLENSKI 610 615 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 03:03:24 2016 done: Thu Nov 3 03:03:25 2016 Total Scan time: 4.160 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]