FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0775, 615 aa
  1>>>pF1KSDA0775 615 - 615 aa - 615 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.8826+/-0.00113; mu= -21.6011+/- 0.068
 mean_var=637.3152+/-128.534, 0's: 0 Z-trim(118.0): 16  B-trim: 70 in 1/54
 Lambda= 0.050804
 statistics sampled from 18831 (18840) to 18831 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.579), width:  16
 Scan time:  4.160

The best scores are:                                      opt bits E(32554)
CCDS45722.1 TBKBP1 gene_id:9755|Hs108|chr17        ( 615) 4260 327.0 4.6e-89


>>CCDS45722.1 TBKBP1 gene_id:9755|Hs108|chr17             (615 aa)
 initn: 4260 init1: 4260 opt: 4260  Z-score: 1712.4  bits: 327.0 E(32554): 4.6e-89
Smith-Waterman score: 4260; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:1-615)

               10        20        30        40        50        60
pF1KSD MESMFEDDISILTQEALGPSEVWLDSPGDPSLGGDMCSASHFALITAYGDIKERLGGLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MESMFEDDISILTQEALGPSEVWLDSPGDPSLGGDMCSASHFALITAYGDIKERLGGLER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ENATLRRRLKVYEIKYPLISDFGEEHGFSLYEIKDGSLLEVEKVSLQQRLNQFQHELQKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ENATLRRRLKVYEIKYPLISDFGEEHGFSLYEIKDGSLLEVEKVSLQQRLNQFQHELQKN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KEQEEQLGEMIQAYEKLCVEKSDLETELREMRALVETHLRQICGLEQQLRQQQGLQDAAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KEQEEQLGEMIQAYEKLCVEKSDLETELREMRALVETHLRQICGLEQQLRQQQGLQDAAF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SNLSPPPAPAPPCTDLDLHYLALRGGSGLSHAGWPGSTPSVSDLERRRLEEALEAAQGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SNLSPPPAPAPPCTDLDLHYLALRGGSGLSHAGWPGSTPSVSDLERRRLEEALEAAQGEA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RGAQLREEQLQAECERLQGELKQLQETRAQDLASNQSERDMAWVKRVGDDQVNLALAYTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RGAQLREEQLQAECERLQGELKQLQETRAQDLASNQSERDMAWVKRVGDDQVNLALAYTE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LTEELGRLRELSSLQGRILRTLLQEQARSGGQRHSPLSQRHSPAPQCPSPSPPARAAPPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LTEELGRLRELSSLQGRILRTLLQEQARSGGQRHSPLSQRHSPAPQCPSPSPPARAAPPC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PPCQSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPVPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PPCQSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPVPPS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD CPAPQPRPPPPPPPGERTLAERAYAKPPSHHVKAGFQGRRSYSELAEGAAYAGASPPWLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CPAPQPRPPPPPPPGERTLAERAYAKPPSHHVKAGFQGRRSYSELAEGAAYAGASPPWLQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD AEAATLPKPRAYGSELYGPGRPLSPRRAFEGIRLRFEKQPSEEDEWAVPTSPPSPEVGTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEAATLPKPRAYGSELYGPGRPLSPRRAFEGIRLRFEKQPSEEDEWAVPTSPPSPEVGTI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD RCASFCAGFPIPESPAATAYAHAEHAQSWPSINLLMETVGSDIRSCPLCQLGFPVGYPDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RCASFCAGFPIPESPAATAYAHAEHAQSWPSINLLMETVGSDIRSCPLCQLGFPVGYPDD
              550       560       570       580       590       600

              610     
pF1KSD ALIKHIDSHLENSKI
       :::::::::::::::
CCDS45 ALIKHIDSHLENSKI
              610     




615 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:03:24 2016 done: Thu Nov  3 03:03:25 2016
 Total Scan time:  4.160 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]