FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0776, 794 aa
  1>>>pF1KSDA0776 794 - 794 aa - 794 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3516+/-0.00047; mu= 16.1601+/- 0.029
 mean_var=102.2750+/-20.001, 0's: 0 Z-trim(111.6): 13  B-trim: 353 in 1/52
 Lambda= 0.126821
 statistics sampled from 20212 (20221) to 20212 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.578), E-opt: 0.2 (0.237), width:  16
 Scan time: 12.260

The best scores are:                                      opt bits E(85289)
NP_056138 (OMIM: 613372) E3 UFM1-protein ligase 1  ( 794) 5029 931.6       0


>>NP_056138 (OMIM: 613372) E3 UFM1-protein ligase 1 [Hom  (794 aa)
 initn: 5029 init1: 5029 opt: 5029  Z-score: 4976.1  bits: 931.6 E(85289):    0
Smith-Waterman score: 5029; 100.0% identity (100.0% similar) in 794 aa overlap (1-794:1-794)

               10        20        30        40        50        60
pF1KSD MADAWEEIRRLAADFQRAQFAEATQRLSERNCIEIVNKLIAQKQLEVVHTLDGKEYITPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MADAWEEIRRLAADFQRAQFAEATQRLSERNCIEIVNKLIAQKQLEVVHTLDGKEYITPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QISKEMRDELHVRGGRVNIVDLQQVINVDLIHIENRIGDIIKSEKHVQLVLGQLIDENYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QISKEMRDELHVRGGRVNIVDLQQVINVDLIHIENRIGDIIKSEKHVQLVLGQLIDENYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DRLAEEVNDKLQESGQVTISELCKTYDLPGNFLTQALTQRLGRIISGHIDLDNRGVIFTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DRLAEEVNDKLQESGQVTISELCKTYDLPGNFLTQALTQRLGRIISGHIDLDNRGVIFTE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD AFVARHKARIRGLFSAITRPTAVNSLISKYGFQEQLLYSVLEELVNSGRLRGTVVGGRQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AFVARHKARIRGLFSAITRPTAVNSLISKYGFQEQLLYSVLEELVNSGRLRGTVVGGRQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KAVFVPDIYSRTQSTWVDSFFRQNGYLEFDALSRLGIPDAVSYIKKRYKTTQLLFLKAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KAVFVPDIYSRTQSTWVDSFFRQNGYLEFDALSRLGIPDAVSYIKKRYKTTQLLFLKAAC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VGQGLVDQVEASVEEAISSGTWVDIAPLLPTSLSVEDAAILLQQVMRAFSKQASTVVFSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VGQGLVDQVEASVEEAISSGTWVDIAPLLPTSLSVEDAAILLQQVMRAFSKQASTVVFSD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD TVVVSEKFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TVVVSEKFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD EIEDFLRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EIEDFLRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD QEEVSNLYNNIRLFEKGMKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QEEVSNLYNNIRLFEKGMKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AAITSEIRKKILSKLSEETKVALTKLHNSLNEKSIEDFISCLDSAAEACDIMVKRGDKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AAITSEIRKKILSKLSEETKVALTKLHNSLNEKSIEDFISCLDSAAEACDIMVKRGDKKR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD ERQILFQHRQALAEQLKVTEDPALILHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLNSKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ERQILFQHRQALAEQLKVTEDPALILHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLNSKI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD PEDQHALLVKYQGLVVKQLVSQSKKTGQGDYPLNNELDKEQEDVASTTRKELQELSSSIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PEDQHALLVKYQGLVVKQLVSQSKKTGQGDYPLNNELDKEQEDVASTTRKELQELSSSIK
              730       740       750       760       770       780

              790    
pF1KSD DLVLKSRKSSVTEE
       ::::::::::::::
NP_056 DLVLKSRKSSVTEE
              790    




794 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:04:00 2016 done: Thu Nov  3 03:04:01 2016
 Total Scan time: 12.260 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]