FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0831, 379 aa
  1>>>pF1KSDA0831 379 - 379 aa - 379 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6059+/-0.000825; mu= 11.2340+/- 0.050
 mean_var=94.6777+/-18.840, 0's: 0 Z-trim(109.5): 5  B-trim: 248 in 1/51
 Lambda= 0.131811
 statistics sampled from 10956 (10958) to 10956 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.337), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS32087.1 ATG14 gene_id:22863|Hs108|chr14        ( 492) 2496 484.6 7.8e-137


>>CCDS32087.1 ATG14 gene_id:22863|Hs108|chr14             (492 aa)
 initn: 2496 init1: 2496 opt: 2496  Z-score: 2570.1  bits: 484.6 E(32554): 7.8e-137
Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 379 aa overlap (1-379:114-492)

                                             10        20        30
pF1KSD                               MSCKMRIEQLKQTICKGNEEMEKNSEGLLK
                                     ::::::::::::::::::::::::::::::
CCDS32 RLKSKQEEFQKEVLKAMEGKWITDQLRWKIMSCKMRIEQLKQTICKGNEEMEKNSEGLLK
            90       100       110       120       130       140   

               40        50        60        70        80        90
pF1KSD TKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANLRRSHILELTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANLRRSHILELTS
           150       160       170       180       190       200   

              100       110       120       130       140       150
pF1KSD VIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEARRTTYLSGRWVCDDHNGDTSISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEARRTTYLSGRWVCDDHNGDTSISI
           210       220       230       240       250       260   

              160       170       180       190       200       210
pF1KSD TGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDV
           270       280       290       300       310       320   

              220       230       240       250       260       270
pF1KSD NLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVS
           330       340       350       360       370       380   

              280       290       300       310       320       330
pF1KSD PSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRF
           390       400       410       420       430       440   

              340       350       360       370         
pF1KSD CDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR
           450       460       470       480       490  




379 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:37:22 2016 done: Thu Nov  3 03:37:22 2016
 Total Scan time:  3.000 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]