FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KSDA0831, 379 aa 1>>>pF1KSDA0831 379 - 379 aa - 379 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4002+/-0.000347; mu= 12.5928+/- 0.022 mean_var=99.3717+/-19.805, 0's: 0 Z-trim(117.0): 4 B-trim: 867 in 1/57 Lambda= 0.128660 statistics sampled from 28682 (28685) to 28682 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.336), width: 16 Scan time: 9.130 The best scores are: opt bits E(85289) XP_011534865 (OMIM: 613515) PREDICTED: beclin 1-as ( 379) 2496 473.4 3.7e-133 NP_055739 (OMIM: 613515) beclin 1-associated autop ( 492) 2496 473.5 4.6e-133 >>XP_011534865 (OMIM: 613515) PREDICTED: beclin 1-associ (379 aa) initn: 2496 init1: 2496 opt: 2496 Z-score: 2511.6 bits: 473.4 E(85289): 3.7e-133 Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 379 aa overlap (1-379:1-379) 10 20 30 40 50 60 pF1KSD MSCKMRIEQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSCKMRIEQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KSD DLVEKKTIDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPADVSSESDSAMTSST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DLVEKKTIDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPADVSSESDSAMTSST 70 80 90 100 110 120 130 140 150 160 170 180 pF1KSD VSKLAEARRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYYSWVEEKKTTQGPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VSKLAEARRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYYSWVEEKKTTQGPD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KSD MEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KSD NILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KSD GESDESGDERVSDEETDLGTDWENLPSPRFCDIPSQSVEVSQSQSTQASPPIASSSAGGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GESDESGDERVSDEETDLGTDWENLPSPRFCDIPSQSVEVSQSQSTQASPPIASSSAGGM 310 320 330 340 350 360 370 pF1KSD ISSAAASVTSWFKAYTGHR ::::::::::::::::::: XP_011 ISSAAASVTSWFKAYTGHR 370 >>NP_055739 (OMIM: 613515) beclin 1-associated autophagy (492 aa) initn: 2496 init1: 2496 opt: 2496 Z-score: 2509.9 bits: 473.5 E(85289): 4.6e-133 Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 379 aa overlap (1-379:114-492) 10 20 30 pF1KSD MSCKMRIEQLKQTICKGNEEMEKNSEGLLK :::::::::::::::::::::::::::::: NP_055 RLKSKQEEFQKEVLKAMEGKWITDQLRWKIMSCKMRIEQLKQTICKGNEEMEKNSEGLLK 90 100 110 120 130 140 40 50 60 70 80 90 pF1KSD TKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANLRRSHILELTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 TKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANLRRSHILELTS 150 160 170 180 190 200 100 110 120 130 140 150 pF1KSD VIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEARRTTYLSGRWVCDDHNGDTSISI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 VIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEARRTTYLSGRWVCDDHNGDTSISI 210 220 230 240 250 260 160 170 180 190 200 210 pF1KSD TGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 TGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDV 270 280 290 300 310 320 220 230 240 250 260 270 pF1KSD NLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 NLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVS 330 340 350 360 370 380 280 290 300 310 320 330 pF1KSD PSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 PSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRF 390 400 410 420 430 440 340 350 360 370 pF1KSD CDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR ::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 CDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR 450 460 470 480 490 379 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 03:37:22 2016 done: Thu Nov 3 03:37:24 2016 Total Scan time: 9.130 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]