Result of FASTA (ccds) for
pF1KSDA0839
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0839, 1393 aa
1>>>pF1KSDA0839 1393 - 1393 aa - 1393 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1014+/-0.00112; mu= 18.5183+/- 0.068
mean_var=73.6439+/-14.500, 0's: 0 Z-trim(102.8): 18 B-trim: 27 in 1/51
Lambda= 0.149453
statistics sampled from 7127 (7130) to 7127 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.219), width: 16
Scan time: 4.890
The best scores are: opt bits E(32554)
CCDS31028.1 RAB3GAP2 gene_id:25782|Hs108|chr1 (1393) 9243 2003.3 0
>>CCDS31028.1 RAB3GAP2 gene_id:25782|Hs108|chr1 (1393 aa)
initn: 9243 init1: 9243 opt: 9243 Z-score: 10759.5 bits: 2003.3 E(32554): 0
Smith-Waterman score: 9243; 100.0% identity (100.0% similar) in 1393 aa overlap (1-1393:1-1393)
10 20 30 40 50 60
pF1KSD MACSIVQFCYFQDLQAARDFLFPHLREEILSGALRRDPSKSTDWEDDGWGAWEENEPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MACSIVQFCYFQDLQAARDFLFPHLREEILSGALRRDPSKSTDWEDDGWGAWEENEPQEP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EEEGNTCKTQKTSWLQDCVLSLSPTNDLMVIAREQKAVFLVPKWKYSDKGKEEMQFAVGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EEEGNTCKTQKTSWLQDCVLSLSPTNDLMVIAREQKAVFLVPKWKYSDKGKEEMQFAVGW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD SGSLNVEEGECVTSALCIPLASQKRSSTGRPDWTCIVVGFTSGYVRFYTENGVLLLAQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SGSLNVEEGECVTSALCIPLASQKRSSTGRPDWTCIVVGFTSGYVRFYTENGVLLLAQLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD NEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAAIVTIDGFSLFQSLRACRNQVAKAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAAIVTIDGFSLFQSLRACRNQVAKAAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SGNENIQPPPLAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SGNENIQPPPLAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNAASGWLGWKSKHEEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNAASGWLGWKSKHEEEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD VQKQKPKVEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VQKQKPKVEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD MWKGYRDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MWKGYRDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWST
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFH
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD LALSDKKSERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LALSDKKSERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESILA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD SERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD TPFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TPFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD KDVLNIKKISEEEYVALGSFFFWKCLHGESSTEDMCHTLESAGLSPQLLLSLLLSVWLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KDVLNIKKISEEEYVALGSFFFWKCLHGESSTEDMCHTLESAGLSPQLLLSLLLSVWLSK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD EKDILDKPQSICCLHTMLSLLSKMKVAIDETWDSQSVSPWWQQMRTACIQSENNGAALLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EKDILDKPQSICCLHTMLSLLSKMKVAIDETWDSQSVSPWWQQMRTACIQSENNGAALLS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD AHVGHSVAAQISNNMTEKKFSQTVLGADSEALTDSWEALSLDTEYWKLLLKQLEDCLILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AHVGHSVAAQISNNMTEKKFSQTVLGADSEALTDSWEALSLDTEYWKLLLKQLEDCLILQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD TLLHSKGNTQTSKVSSLQAEPLPRLSVKKLLEGGKGGIADSVAKWIFKQDFSPEVLKLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TLLHSKGNTQTSKVSSLQAEPLPRLSVKKLLEGGKGGIADSVAKWIFKQDFSPEVLKLAN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD EERDAENPDEPKEGVNRSFLEVSEMEMDLGAIPDLLHLAYEQFPCSLELDVLHAHCCWEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EERDAENPDEPKEGVNRSFLEVSEMEMDLGAIPDLLHLAYEQFPCSLELDVLHAHCCWEY
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD VVQWNKDPEEARFFVRSIEHLKQIFNAHVQNGIALMMWNTFLVKRFSAATYLMDKVGKSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VVQWNKDPEEARFFVRSIEHLKQIFNAHVQNGIALMMWNTFLVKRFSAATYLMDKVGKSP
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD KDRLCRRDVGMSDTAMTSFLGSCLDLLQILMEADVSRDEIQVPVLDTEDAWLSVEGPISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KDRLCRRDVGMSDTAMTSFLGSCLDLLQILMEADVSRDEIQVPVLDTEDAWLSVEGPISI
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD VELALEQKHIHYPLVEHHSILCSILYAVMRFSLKTVKPLSLFDSKGKNAFFKDLTSIQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VELALEQKHIHYPLVEHHSILCSILYAVMRFSLKTVKPLSLFDSKGKNAFFKDLTSIQLL
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD PSGEMDPNFISVRQQFLLKVVSAAVQAQHSATKVKDPTEEATPTPFGKDQDWPALAVDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSGEMDPNFISVRQQFLLKVVSAAVQAQHSATKVKDPTEEATPTPFGKDQDWPALAVDLA
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD HHLQVSEDVVRRHYVGELYNYGVDHLGEEAILQVHDKEVLASQLLVLTGQRLAHALLHTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HHLQVSEDVVRRHYVGELYNYGVDHLGEEAILQVHDKEVLASQLLVLTGQRLAHALLHTQ
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KSD TKEGMELLARLPPTLCTWLKAMDPQDLQNTEVPIATTAKLVNKVIELLPEKHGQYGLALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TKEGMELLARLPPTLCTWLKAMDPQDLQNTEVPIATTAKLVNKVIELLPEKHGQYGLALH
1330 1340 1350 1360 1370 1380
1390
pF1KSD LIEAVEAISLPSL
:::::::::::::
CCDS31 LIEAVEAISLPSL
1390
1393 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:40:00 2016 done: Thu Nov 3 03:40:01 2016
Total Scan time: 4.890 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]