Result of FASTA (omim) for
pF1KSDA0839
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0839, 1393 aa
1>>>pF1KSDA0839 1393 - 1393 aa - 1393 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5106+/-0.000448; mu= 22.3585+/- 0.028
mean_var=75.8512+/-15.026, 0's: 0 Z-trim(110.0): 6 B-trim: 259 in 2/52
Lambda= 0.147263
statistics sampled from 18238 (18242) to 18238 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.56), E-opt: 0.2 (0.214), width: 16
Scan time: 17.270
The best scores are: opt bits E(85289)
NP_036546 (OMIM: 212720,609275,614225) rab3 GTPase (1393) 9243 1974.4 0
>>NP_036546 (OMIM: 212720,609275,614225) rab3 GTPase-act (1393 aa)
initn: 9243 init1: 9243 opt: 9243 Z-score: 10603.4 bits: 1974.4 E(85289): 0
Smith-Waterman score: 9243; 100.0% identity (100.0% similar) in 1393 aa overlap (1-1393:1-1393)
10 20 30 40 50 60
pF1KSD MACSIVQFCYFQDLQAARDFLFPHLREEILSGALRRDPSKSTDWEDDGWGAWEENEPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MACSIVQFCYFQDLQAARDFLFPHLREEILSGALRRDPSKSTDWEDDGWGAWEENEPQEP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EEEGNTCKTQKTSWLQDCVLSLSPTNDLMVIAREQKAVFLVPKWKYSDKGKEEMQFAVGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EEEGNTCKTQKTSWLQDCVLSLSPTNDLMVIAREQKAVFLVPKWKYSDKGKEEMQFAVGW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD SGSLNVEEGECVTSALCIPLASQKRSSTGRPDWTCIVVGFTSGYVRFYTENGVLLLAQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SGSLNVEEGECVTSALCIPLASQKRSSTGRPDWTCIVVGFTSGYVRFYTENGVLLLAQLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD NEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAAIVTIDGFSLFQSLRACRNQVAKAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 NEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAAIVTIDGFSLFQSLRACRNQVAKAAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SGNENIQPPPLAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SGNENIQPPPLAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNAASGWLGWKSKHEEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNAASGWLGWKSKHEEEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD VQKQKPKVEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VQKQKPKVEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD MWKGYRDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MWKGYRDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWST
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFH
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD LALSDKKSERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LALSDKKSERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESILA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD SERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD TPFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TPFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD KDVLNIKKISEEEYVALGSFFFWKCLHGESSTEDMCHTLESAGLSPQLLLSLLLSVWLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KDVLNIKKISEEEYVALGSFFFWKCLHGESSTEDMCHTLESAGLSPQLLLSLLLSVWLSK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD EKDILDKPQSICCLHTMLSLLSKMKVAIDETWDSQSVSPWWQQMRTACIQSENNGAALLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EKDILDKPQSICCLHTMLSLLSKMKVAIDETWDSQSVSPWWQQMRTACIQSENNGAALLS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD AHVGHSVAAQISNNMTEKKFSQTVLGADSEALTDSWEALSLDTEYWKLLLKQLEDCLILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AHVGHSVAAQISNNMTEKKFSQTVLGADSEALTDSWEALSLDTEYWKLLLKQLEDCLILQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD TLLHSKGNTQTSKVSSLQAEPLPRLSVKKLLEGGKGGIADSVAKWIFKQDFSPEVLKLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TLLHSKGNTQTSKVSSLQAEPLPRLSVKKLLEGGKGGIADSVAKWIFKQDFSPEVLKLAN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD EERDAENPDEPKEGVNRSFLEVSEMEMDLGAIPDLLHLAYEQFPCSLELDVLHAHCCWEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EERDAENPDEPKEGVNRSFLEVSEMEMDLGAIPDLLHLAYEQFPCSLELDVLHAHCCWEY
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD VVQWNKDPEEARFFVRSIEHLKQIFNAHVQNGIALMMWNTFLVKRFSAATYLMDKVGKSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VVQWNKDPEEARFFVRSIEHLKQIFNAHVQNGIALMMWNTFLVKRFSAATYLMDKVGKSP
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD KDRLCRRDVGMSDTAMTSFLGSCLDLLQILMEADVSRDEIQVPVLDTEDAWLSVEGPISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KDRLCRRDVGMSDTAMTSFLGSCLDLLQILMEADVSRDEIQVPVLDTEDAWLSVEGPISI
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD VELALEQKHIHYPLVEHHSILCSILYAVMRFSLKTVKPLSLFDSKGKNAFFKDLTSIQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VELALEQKHIHYPLVEHHSILCSILYAVMRFSLKTVKPLSLFDSKGKNAFFKDLTSIQLL
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD PSGEMDPNFISVRQQFLLKVVSAAVQAQHSATKVKDPTEEATPTPFGKDQDWPALAVDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PSGEMDPNFISVRQQFLLKVVSAAVQAQHSATKVKDPTEEATPTPFGKDQDWPALAVDLA
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD HHLQVSEDVVRRHYVGELYNYGVDHLGEEAILQVHDKEVLASQLLVLTGQRLAHALLHTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 HHLQVSEDVVRRHYVGELYNYGVDHLGEEAILQVHDKEVLASQLLVLTGQRLAHALLHTQ
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KSD TKEGMELLARLPPTLCTWLKAMDPQDLQNTEVPIATTAKLVNKVIELLPEKHGQYGLALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TKEGMELLARLPPTLCTWLKAMDPQDLQNTEVPIATTAKLVNKVIELLPEKHGQYGLALH
1330 1340 1350 1360 1370 1380
1390
pF1KSD LIEAVEAISLPSL
:::::::::::::
NP_036 LIEAVEAISLPSL
1390
1393 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:40:02 2016 done: Thu Nov 3 03:40:04 2016
Total Scan time: 17.270 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]