FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0841, 633 aa
  1>>>pF1KSDA0841 633 - 633 aa - 633 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7153+/-0.000879; mu= 8.2939+/- 0.052
 mean_var=132.3194+/-26.400, 0's: 0 Z-trim(110.7): 22  B-trim: 107 in 2/51
 Lambda= 0.111497
 statistics sampled from 11816 (11830) to 11816 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.363), width:  16
 Scan time:  4.180

The best scores are:                                      opt bits E(32554)
CCDS42550.1 HAUS5 gene_id:23354|Hs108|chr19        ( 633) 4194 686.2 3.5e-197


>>CCDS42550.1 HAUS5 gene_id:23354|Hs108|chr19             (633 aa)
 initn: 4194 init1: 4194 opt: 4194  Z-score: 3653.4  bits: 686.2 E(32554): 3.5e-197
Smith-Waterman score: 4194; 100.0% identity (100.0% similar) in 633 aa overlap (1-633:1-633)

               10        20        30        40        50        60
pF1KSD MELAQEARELGCWAVEEMGVPVAARAPESTLRRLCLGQGADIWAYILQHVHSQRTVKKIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MELAQEARELGCWAVEEMGVPVAARAPESTLRRLCLGQGADIWAYILQHVHSQRTVKKIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD GNLLWYGHQDSPQVRRKLELEAAVTRLRAEIQELDQSLELMERDTEAQDTAMEQARQHTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GNLLWYGHQDSPQVRRKLELEAAVTRLRAEIQELDQSLELMERDTEAQDTAMEQARQHTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DTQRRALLLRAQAGAMRRQQHTLRDPMQRLQNQLRRLQDMERKAKVDVTFGSLTSAALGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DTQRRALLLRAQAGAMRRQQHTLRDPMQRLQNQLRRLQDMERKAKVDVTFGSLTSAALGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD EPVVLRDVRTACTLRAQFLQNLLLPQAKRGSLPTPHDDHFGTSYQQWLSSVETLLTNHPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EPVVLRDVRTACTLRAQFLQNLLLPQAKRGSLPTPHDDHFGTSYQQWLSSVETLLTNHPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GHVLAALEHLAAEREAEIRSLCSGDGLGDTEISRPQAPDQSDSSQTLPSMVHLIQEGWRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GHVLAALEHLAAEREAEIRSLCSGDGLGDTEISRPQAPDQSDSSQTLPSMVHLIQEGWRT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VGVLVSQRSTLLKERQVLTQRLQGLVEEVERRVLGSSERQVLILGLRRCCLWTELKALHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VGVLVSQRSTLLKERQVLTQRLQGLVEEVERRVLGSSERQVLILGLRRCCLWTELKALHD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QSQELQDAAGHRQLLLRELQAKQQRILHWRQLVEETQEQVRLLIKGNSASKTRLCRSPGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QSQELQDAAGHRQLLLRELQAKQQRILHWRQLVEETQEQVRLLIKGNSASKTRLCRSPGE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VLALVQRKVVPTFEAVAPQSRELLRCLEEEVRHLPHILLGTLLRHRPGELKPLPTVLPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VLALVQRKVVPTFEAVAPQSRELLRCLEEEVRHLPHILLGTLLRHRPGELKPLPTVLPSI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD HQLHPASPRGSSFIALSHKLGLPPGKASELLLPAAASLRQDLLLLQDQRSLWCWDLLHMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HQLHPASPRGSSFIALSHKLGLPPGKASELLLPAAASLRQDLLLLQDQRSLWCWDLLHMK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TSLPPGLPTQELLQIQASQEKQQKENLGQALKRLEKLLKQALERIPELQGIVGDWWEQPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TSLPPGLPTQELLQIQASQEKQQKENLGQALKRLEKLLKQALERIPELQGIVGDWWEQPG
              550       560       570       580       590       600

              610       620       630   
pF1KSD QAALSEELCQGLSLPQWRLRWVQAQGALQKLCS
       :::::::::::::::::::::::::::::::::
CCDS42 QAALSEELCQGLSLPQWRLRWVQAQGALQKLCS
              610       620       630   




633 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:40:42 2016 done: Thu Nov  3 03:40:43 2016
 Total Scan time:  4.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]