FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0841, 633 aa
  1>>>pF1KSDA0841 633 - 633 aa - 633 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6068+/-0.000371; mu= 8.9834+/- 0.023
 mean_var=144.4018+/-28.865, 0's: 0 Z-trim(117.8): 18  B-trim: 710 in 2/52
 Lambda= 0.106730
 statistics sampled from 30199 (30218) to 30199 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.354), width:  16
 Scan time: 11.460

The best scores are:                                      opt bits E(85289)
NP_056117 (OMIM: 613432) HAUS augmin-like complex  ( 633) 4194 657.8 3.3e-188
XP_011524986 (OMIM: 613432) PREDICTED: HAUS augmin ( 533) 3529 555.3 1.9e-157


>>NP_056117 (OMIM: 613432) HAUS augmin-like complex subu  (633 aa)
 initn: 4194 init1: 4194 opt: 4194  Z-score: 3499.9  bits: 657.8 E(85289): 3.3e-188
Smith-Waterman score: 4194; 100.0% identity (100.0% similar) in 633 aa overlap (1-633:1-633)

               10        20        30        40        50        60
pF1KSD MELAQEARELGCWAVEEMGVPVAARAPESTLRRLCLGQGADIWAYILQHVHSQRTVKKIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MELAQEARELGCWAVEEMGVPVAARAPESTLRRLCLGQGADIWAYILQHVHSQRTVKKIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD GNLLWYGHQDSPQVRRKLELEAAVTRLRAEIQELDQSLELMERDTEAQDTAMEQARQHTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GNLLWYGHQDSPQVRRKLELEAAVTRLRAEIQELDQSLELMERDTEAQDTAMEQARQHTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DTQRRALLLRAQAGAMRRQQHTLRDPMQRLQNQLRRLQDMERKAKVDVTFGSLTSAALGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DTQRRALLLRAQAGAMRRQQHTLRDPMQRLQNQLRRLQDMERKAKVDVTFGSLTSAALGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD EPVVLRDVRTACTLRAQFLQNLLLPQAKRGSLPTPHDDHFGTSYQQWLSSVETLLTNHPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EPVVLRDVRTACTLRAQFLQNLLLPQAKRGSLPTPHDDHFGTSYQQWLSSVETLLTNHPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GHVLAALEHLAAEREAEIRSLCSGDGLGDTEISRPQAPDQSDSSQTLPSMVHLIQEGWRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GHVLAALEHLAAEREAEIRSLCSGDGLGDTEISRPQAPDQSDSSQTLPSMVHLIQEGWRT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VGVLVSQRSTLLKERQVLTQRLQGLVEEVERRVLGSSERQVLILGLRRCCLWTELKALHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VGVLVSQRSTLLKERQVLTQRLQGLVEEVERRVLGSSERQVLILGLRRCCLWTELKALHD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QSQELQDAAGHRQLLLRELQAKQQRILHWRQLVEETQEQVRLLIKGNSASKTRLCRSPGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QSQELQDAAGHRQLLLRELQAKQQRILHWRQLVEETQEQVRLLIKGNSASKTRLCRSPGE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VLALVQRKVVPTFEAVAPQSRELLRCLEEEVRHLPHILLGTLLRHRPGELKPLPTVLPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VLALVQRKVVPTFEAVAPQSRELLRCLEEEVRHLPHILLGTLLRHRPGELKPLPTVLPSI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD HQLHPASPRGSSFIALSHKLGLPPGKASELLLPAAASLRQDLLLLQDQRSLWCWDLLHMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 HQLHPASPRGSSFIALSHKLGLPPGKASELLLPAAASLRQDLLLLQDQRSLWCWDLLHMK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TSLPPGLPTQELLQIQASQEKQQKENLGQALKRLEKLLKQALERIPELQGIVGDWWEQPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TSLPPGLPTQELLQIQASQEKQQKENLGQALKRLEKLLKQALERIPELQGIVGDWWEQPG
              550       560       570       580       590       600

              610       620       630   
pF1KSD QAALSEELCQGLSLPQWRLRWVQAQGALQKLCS
       :::::::::::::::::::::::::::::::::
NP_056 QAALSEELCQGLSLPQWRLRWVQAQGALQKLCS
              610       620       630   

>>XP_011524986 (OMIM: 613432) PREDICTED: HAUS augmin-lik  (533 aa)
 initn: 3529 init1: 3529 opt: 3529  Z-score: 2947.6  bits: 555.3 E(85289): 1.9e-157
Smith-Waterman score: 3529; 100.0% identity (100.0% similar) in 533 aa overlap (101-633:1-533)

               80        90       100       110       120       130
pF1KSD SPQVRRKLELEAAVTRLRAEIQELDQSLELMERDTEAQDTAMEQARQHTQDTQRRALLLR
                                     ::::::::::::::::::::::::::::::
XP_011                               MERDTEAQDTAMEQARQHTQDTQRRALLLR
                                             10        20        30

              140       150       160       170       180       190
pF1KSD AQAGAMRRQQHTLRDPMQRLQNQLRRLQDMERKAKVDVTFGSLTSAALGLEPVVLRDVRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AQAGAMRRQQHTLRDPMQRLQNQLRRLQDMERKAKVDVTFGSLTSAALGLEPVVLRDVRT
               40        50        60        70        80        90

              200       210       220       230       240       250
pF1KSD ACTLRAQFLQNLLLPQAKRGSLPTPHDDHFGTSYQQWLSSVETLLTNHPPGHVLAALEHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ACTLRAQFLQNLLLPQAKRGSLPTPHDDHFGTSYQQWLSSVETLLTNHPPGHVLAALEHL
              100       110       120       130       140       150

              260       270       280       290       300       310
pF1KSD AAEREAEIRSLCSGDGLGDTEISRPQAPDQSDSSQTLPSMVHLIQEGWRTVGVLVSQRST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAEREAEIRSLCSGDGLGDTEISRPQAPDQSDSSQTLPSMVHLIQEGWRTVGVLVSQRST
              160       170       180       190       200       210

              320       330       340       350       360       370
pF1KSD LLKERQVLTQRLQGLVEEVERRVLGSSERQVLILGLRRCCLWTELKALHDQSQELQDAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLKERQVLTQRLQGLVEEVERRVLGSSERQVLILGLRRCCLWTELKALHDQSQELQDAAG
              220       230       240       250       260       270

              380       390       400       410       420       430
pF1KSD HRQLLLRELQAKQQRILHWRQLVEETQEQVRLLIKGNSASKTRLCRSPGEVLALVQRKVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HRQLLLRELQAKQQRILHWRQLVEETQEQVRLLIKGNSASKTRLCRSPGEVLALVQRKVV
              280       290       300       310       320       330

              440       450       460       470       480       490
pF1KSD PTFEAVAPQSRELLRCLEEEVRHLPHILLGTLLRHRPGELKPLPTVLPSIHQLHPASPRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTFEAVAPQSRELLRCLEEEVRHLPHILLGTLLRHRPGELKPLPTVLPSIHQLHPASPRG
              340       350       360       370       380       390

              500       510       520       530       540       550
pF1KSD SSFIALSHKLGLPPGKASELLLPAAASLRQDLLLLQDQRSLWCWDLLHMKTSLPPGLPTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSFIALSHKLGLPPGKASELLLPAAASLRQDLLLLQDQRSLWCWDLLHMKTSLPPGLPTQ
              400       410       420       430       440       450

              560       570       580       590       600       610
pF1KSD ELLQIQASQEKQQKENLGQALKRLEKLLKQALERIPELQGIVGDWWEQPGQAALSEELCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELLQIQASQEKQQKENLGQALKRLEKLLKQALERIPELQGIVGDWWEQPGQAALSEELCQ
              460       470       480       490       500       510

              620       630   
pF1KSD GLSLPQWRLRWVQAQGALQKLCS
       :::::::::::::::::::::::
XP_011 GLSLPQWRLRWVQAQGALQKLCS
              520       530   




633 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:40:43 2016 done: Thu Nov  3 03:40:45 2016
 Total Scan time: 11.460 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]