FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0842, 1019 aa
  1>>>pF1KSDA0842 1019 - 1019 aa - 1019 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2646+/-0.000968; mu= 8.9603+/- 0.058
 mean_var=179.0082+/-35.913, 0's: 0 Z-trim(111.0): 23  B-trim: 94 in 1/52
 Lambda= 0.095860
 statistics sampled from 12013 (12027) to 12013 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.369), width:  16
 Scan time:  5.370

The best scores are:                                      opt bits E(32554)
CCDS44063.1 PLEKHM2 gene_id:23207|Hs108|chr1       (1019) 6903 967.8       0


>>CCDS44063.1 PLEKHM2 gene_id:23207|Hs108|chr1            (1019 aa)
 initn: 6903 init1: 6903 opt: 6903  Z-score: 5167.7  bits: 967.8 E(32554):    0
Smith-Waterman score: 6903; 100.0% identity (100.0% similar) in 1019 aa overlap (1-1019:1-1019)

               10        20        30        40        50        60
pF1KSD MEPGEVKDRILENISLSVKKLQSYFAACEDEIPAIRNHDKVLQRLCEHLDHALLYGLQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEPGEVKDRILENISLSVKKLQSYFAACEDEIPAIRNHDKVLQRLCEHLDHALLYGLQDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SSGYWVLVVHFTRREAIKQIEVLQHVATNLGRSRAWLYLALNENSLESYLRLFQENLGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SSGYWVLVVHFTRREAIKQIEVLQHVATNLGRSRAWLYLALNENSLESYLRLFQENLGLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD HKYYVKNALVCSHDHLTLFLTLVSGLEFIRFELDLDAPYLDLAPYMPDYYKPQYLLDFED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HKYYVKNALVCSHDHLTLFLTLVSGLEFIRFELDLDAPYLDLAPYMPDYYKPQYLLDFED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD RLPSSVHGSDSLSLNSFNSVTSTNLEWDDSAIAPSSEDYDFGDVFPAVPSVPSTDWEDGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RLPSSVHGSDSLSLNSFNSVTSTNLEWDDSAIAPSSEDYDFGDVFPAVPSVPSTDWEDGD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LTDTVSGPRSTASDLTSSKASTRSPTQRQNPFNEEPAETVSSSDTTPVHTTSQEKEEAQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LTDTVSGPRSTASDLTSSKASTRSPTQRQNPFNEEPAETVSSSDTTPVHTTSQEKEEAQA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LDPPDACTELEVIRVTKKKKIGKKKKSRSDEEASPLHPACSQKKCAKQGDGDSRNGSPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LDPPDACTELEVIRVTKKKKIGKKKKSRSDEEASPLHPACSQKKCAKQGDGDSRNGSPSL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GRDSPDTMLASPQEEGEGPSSTTESSERSEPGLLIPEMKDTSMERLGQPLSKVIDQLNGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GRDSPDTMLASPQEEGEGPSSTTESSERSEPGLLIPEMKDTSMERLGQPLSKVIDQLNGQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LDPSTWCSRAEPPDQSFRTGSPGDAPERPPLCDFSEGLSAPMDFYRFTVESPSTVTSGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LDPSTWCSRAEPPDQSFRTGSPGDAPERPPLCDFSEGLSAPMDFYRFTVESPSTVTSGGG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD HHDPAGLGQPLHVPSSPEAAGQEEEGGGGEGQTPRPLEDTTREAQELEAQLSLVREGPVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HHDPAGLGQPLHVPSSPEAAGQEEEGGGGEGQTPRPLEDTTREAQELEAQLSLVREGPVS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD EPEPGTQEVLCQLKRDQPSPCLSSAEDSGVDEGQGSPSEMVHSSEFRVDNNHLLLLMIHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EPEPGTQEVLCQLKRDQPSPCLSSAEDSGVDEGQGSPSEMVHSSEFRVDNNHLLLLMIHV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD FRENEEQLFKMIRMSTGHMEGNLQLLYVLLTDCYVYLLRKGATEKPYLVEEAVSYNELDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FRENEEQLFKMIRMSTGHMEGNLQLLYVLLTDCYVYLLRKGATEKPYLVEEAVSYNELDY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VSVGLDQQTVKLVCTNRRKQFLLDTADVALAEFFLASLKSAMIKGCREPPYPSILTDATM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VSVGLDQQTVKLVCTNRRKQFLLDTADVALAEFFLASLKSAMIKGCREPPYPSILTDATM
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD EKLALAKFVAQESKCEASAVTVRFYGLVHWEDPTDESLGPTPCHCSPPEGTITKEGMLHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EKLALAKFVAQESKCEASAVTVRFYGLVHWEDPTDESLGPTPCHCSPPEGTITKEGMLHY
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD KAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTTDRPHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTTDRPHA
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD FQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGVIPQGVAPSPCIPCCLVLTDDRLFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGVIPQGVAPSPCIPCCLVLTDDRLFT
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD CHEDCQTSFFRSLGTAKLGDISAVSTEPGKEYCVLEFSQDSQQLLPPWVIYLSCTSELDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CHEDCQTSFFRSLGTAKLGDISAVSTEPGKEYCVLEFSQDSQQLLPPWVIYLSCTSELDR
              910       920       930       940       950       960

              970       980       990      1000      1010         
pF1KSD LLSALNSGWKTIYQVDLPHTAIQEASNKKKFEDALSLIHSAWQRSDSLCRGRASRDPWC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLSALNSGWKTIYQVDLPHTAIQEASNKKKFEDALSLIHSAWQRSDSLCRGRASRDPWC
              970       980       990      1000      1010         




1019 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:45:48 2016 done: Thu Nov  3 18:45:49 2016
 Total Scan time:  5.370 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]