Result of FASTA (ccds) for
pF1KSDA0860
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0860, 541 aa
1>>>pF1KSDA0860 541 - 541 aa - 541 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7589+/-0.000895; mu= 12.8951+/- 0.054
mean_var=135.5840+/-27.953, 0's: 0 Z-trim(110.4): 23 B-trim: 0 in 0/54
Lambda= 0.110146
statistics sampled from 11576 (11585) to 11576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.356), width: 16
Scan time: 3.610
The best scores are: opt bits E(32554)
CCDS13046.1 UBOX5 gene_id:22888|Hs108|chr20 ( 541) 3695 598.8 5.1e-171
CCDS13047.1 UBOX5 gene_id:22888|Hs108|chr20 ( 487) 2832 461.7 9.1e-130
>>CCDS13046.1 UBOX5 gene_id:22888|Hs108|chr20 (541 aa)
initn: 3695 init1: 3695 opt: 3695 Z-score: 3183.7 bits: 598.8 E(32554): 5.1e-171
Smith-Waterman score: 3695; 100.0% identity (100.0% similar) in 541 aa overlap (1-541:1-541)
10 20 30 40 50 60
pF1KSD MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
490 500 510 520 530 540
pF1KSD F
:
CCDS13 F
>>CCDS13047.1 UBOX5 gene_id:22888|Hs108|chr20 (487 aa)
initn: 2832 init1: 2832 opt: 2832 Z-score: 2443.2 bits: 461.7 E(32554): 9.1e-130
Smith-Waterman score: 3225; 90.0% identity (90.0% similar) in 541 aa overlap (1-541:1-487)
10 20 30 40 50 60
pF1KSD MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCST--
370 380 390 400 410
430 440 450 460 470 480
pF1KSD LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG
::::::::
CCDS13 ----------------------------------------------------EQPGSILG
420
490 500 510 520 530 540
pF1KSD PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
430 440 450 460 470 480
pF1KSD F
:
CCDS13 F
541 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:49:35 2016 done: Thu Nov 3 03:49:35 2016
Total Scan time: 3.610 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]