FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0863, 1131 aa
  1>>>pF1KSDA0863 1131 - 1131 aa - 1131 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.8378+/-0.00123; mu= -12.9603+/- 0.073
 mean_var=394.0169+/-81.668, 0's: 0 Z-trim(112.5): 45  B-trim: 0 in 0/52
 Lambda= 0.064613
 statistics sampled from 13179 (13212) to 13179 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.406), width:  16
 Scan time:  5.890

The best scores are:                                      opt bits E(32554)
CCDS32853.1 ADNP2 gene_id:22850|Hs108|chr18        (1131) 7682 731.3  3e-210


>>CCDS32853.1 ADNP2 gene_id:22850|Hs108|chr18             (1131 aa)
 initn: 7682 init1: 7682 opt: 7682  Z-score: 3888.1  bits: 731.3 E(32554): 3e-210
Smith-Waterman score: 7682; 100.0% identity (100.0% similar) in 1131 aa overlap (1-1131:1-1131)

               10        20        30        40        50        60
pF1KSD MFQIPVENLDNIRKVRKKVKGILVDIGLDSCKELLKDLKGFDPGEKYFHNTSWGDVSLWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MFQIPVENLDNIRKVRKKVKGILVDIGLDSCKELLKDLKGFDPGEKYFHNTSWGDVSLWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PSGKKVRYRTKPYCCGLCKYSTKVLTSFKNHLHRYHEDEIDQELVIPCPNCVFASQPKVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PSGKKVRYRTKPYCCGLCKYSTKVLTSFKNHLHRYHEDEIDQELVIPCPNCVFASQPKVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GRHFRMFHAPVRKVQNYTVNILGETKSSRSDVISFTCLKCNFSNTLYYSMKKHVLVAHFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GRHFRMFHAPVRKVQNYTVNILGETKSSRSDVISFTCLKCNFSNTLYYSMKKHVLVAHFH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YLINSYFGLRTEEMGEQPKTNDTVSIEKIPPPDKYYCKKCNANASSQDALMYHILTSDIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YLINSYFGLRTEEMGEQPKTNDTVSIEKIPPPDKYYCKKCNANASSQDALMYHILTSDIH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RDLENKLRSVISEHIKRTGLLKQTHIAPKPAAHLAAPANGSAPSAPAQPPCFHLALPQNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RDLENKLRSVISEHIKRTGLLKQTHIAPKPAAHLAAPANGSAPSAPAQPPCFHLALPQNS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PSPAAGQPVTVAQGAPGSLTHSPPAAGQSHMTLVSSPLPVGQNSLTLQPPAPQPVFLSHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PSPAAGQPVTVAQGAPGSLTHSPPAAGQSHMTLVSSPLPVGQNSLTLQPPAPQPVFLSHG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD VPLHQSVNPPVLPLSQPVGPVNKSVGTSVLPINQTVRPGVLPLTQPVGPINRPVGPGVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VPLHQSVNPPVLPLSQPVGPVNKSVGTSVLPINQTVRPGVLPLTQPVGPINRPVGPGVLP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPAGVIPGQTATSGVLPTGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPAGVIPGQTATSGVLPTGQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD MVQSGVLPVGQTAPSRVLPPGQTAPLRVISAGQVVPSGLLSPNQTVSSSAVVPVNQGVNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVQSGVLPVGQTAPSRVLPPGQTAPLRVISAGQVVPSGLLSPNQTVSSSAVVPVNQGVNS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD GVLQLSQPVVSGVLPVGQPVRPGVLQLNQTVGTNILPVNQPVRPGASQNTTFLTSGSILR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GVLQLSQPVVSGVLPVGQPVRPGVLQLNQTVGTNILPVNQPVRPGASQNTTFLTSGSILR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD QLIPTGKQVNGIPTYTLAPVSVTLPVPPGGLATVAPPQMPIQLLPSGAAAPMAGSMPGMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLIPTGKQVNGIPTYTLAPVSVTLPVPPGGLATVAPPQMPIQLLPSGAAAPMAGSMPGMP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD SPPVLVNAAQSVFVQASSSAADTNQVLKQAKQWKTCPVCNELFPSNVYQVHMEVAHKHSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SPPVLVNAAQSVFVQASSSAADTNQVLKQAKQWKTCPVCNELFPSNVYQVHMEVAHKHSE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD SKSGEKLEPEKLAACAPFLKWMREKTVRCLSCKCLVSEEELIHHLLMHGLGCLFCPCTFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SKSGEKLEPEKLAACAPFLKWMREKTVRCLSCKCLVSEEELIHHLLMHGLGCLFCPCTFH
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD DIKGLSEHSRNRHLGKKKLPMDYSNRGFQLDVDANGNLLFPHLDFITILPKEKLGEREVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DIKGLSEHSRNRHLGKKKLPMDYSNRGFQLDVDANGNLLFPHLDFITILPKEKLGEREVY
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD LAILAGIHSKSLVPVYVKVRPQAEGTPGSTGKRVSTCPFCFGPFVTTEAYELHLKERHHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LAILAGIHSKSLVPVYVKVRPQAEGTPGSTGKRVSTCPFCFGPFVTTEAYELHLKERHHI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD MPTVHTVLKSPAFKCIHCCGVYTGNMTLAAIAVHLVRCRSAPKDSSSDLQAQPGFIHNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPTVHTVLKSPAFKCIHCCGVYTGNMTLAAIAVHLVRCRSAPKDSSSDLQAQPGFIHNSE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD LLLVSGEVMHDSSFSVKRKLPDGHLGAEDQRHGEEQPPILNADAAPGPEKVTSVVPFKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLLVSGEVMHDSSFSVKRKLPDGHLGAEDQRHGEEQPPILNADAAPGPEKVTSVVPFKRQ
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD RNESRTEGPIVKDEALQILALDPKKYEGRSYEEKKQFLKDYFHKKPYPSKKEIELLSSLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RNESRTEGPIVKDEALQILALDPKKYEGRSYEEKKQFLKDYFHKKPYPSKKEIELLSSLF
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130 
pF1KSD WVWKIDVASFFGKRRYICMKAIKNHKPSVLLGFDMSELKNVKHRLNFEYEP
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WVWKIDVASFFGKRRYICMKAIKNHKPSVLLGFDMSELKNVKHRLNFEYEP
             1090      1100      1110      1120      1130 




1131 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:51:01 2016 done: Thu Nov  3 03:51:02 2016
 Total Scan time:  5.890 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]