Result of FASTA (omim) for
pF1KSDA0873
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0873, 447 aa
1>>>pF1KSDA0873 447 - 447 aa - 447 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4350+/-0.000476; mu= 13.1762+/- 0.029
mean_var=105.0870+/-21.613, 0's: 0 Z-trim(111.1): 21 B-trim: 182 in 1/50
Lambda= 0.125112
statistics sampled from 19658 (19667) to 19658 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.231), width: 16
Scan time: 7.920
The best scores are: opt bits E(85289)
NP_001015048 (OMIM: 603885) BAG family molecular c ( 447) 2879 530.7 2.9e-150
NP_004864 (OMIM: 603885) BAG family molecular chap ( 447) 2879 530.7 2.9e-150
NP_001015049 (OMIM: 603885) BAG family molecular c ( 488) 2879 530.8 3.1e-150
XP_005270344 (OMIM: 603883,612954,613881) PREDICTE ( 574) 230 52.7 3e-06
NP_004272 (OMIM: 603883,612954,613881) BAG family ( 575) 230 52.7 3e-06
NP_001191807 (OMIM: 603884) BAG family molecular c ( 421) 200 47.2 0.0001
NP_004865 (OMIM: 603884) BAG family molecular chap ( 457) 200 47.2 0.00011
>>NP_001015048 (OMIM: 603885) BAG family molecular chape (447 aa)
initn: 2879 init1: 2879 opt: 2879 Z-score: 2818.7 bits: 530.7 E(85289): 2.9e-150
Smith-Waterman score: 2879; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447)
10 20 30 40 50 60
pF1KSD MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC
370 380 390 400 410 420
430 440
pF1KSD KAARKQAVRLAQNILSYLDLKSDEWEY
:::::::::::::::::::::::::::
NP_001 KAARKQAVRLAQNILSYLDLKSDEWEY
430 440
>>NP_004864 (OMIM: 603885) BAG family molecular chaperon (447 aa)
initn: 2879 init1: 2879 opt: 2879 Z-score: 2818.7 bits: 530.7 E(85289): 2.9e-150
Smith-Waterman score: 2879; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447)
10 20 30 40 50 60
pF1KSD MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC
370 380 390 400 410 420
430 440
pF1KSD KAARKQAVRLAQNILSYLDLKSDEWEY
:::::::::::::::::::::::::::
NP_004 KAARKQAVRLAQNILSYLDLKSDEWEY
430 440
>>NP_001015049 (OMIM: 603885) BAG family molecular chape (488 aa)
initn: 2879 init1: 2879 opt: 2879 Z-score: 2818.2 bits: 530.8 E(85289): 3.1e-150
Smith-Waterman score: 2879; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:42-488)
10 20 30
pF1KSD MDMGNQHPSISRLQEIQKEVKSVEQQVIGF
::::::::::::::::::::::::::::::
NP_001 PFDRNQELETCIRPLWTPSGSACETEHNKSMDMGNQHPSISRLQEIQKEVKSVEQQVIGF
20 30 40 50 60 70
40 50 60 70 80 90
pF1KSD SGLSDDKNYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLSDDKNYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPH
80 90 100 110 120 130
100 110 120 130 140 150
pF1KSD RIEIQNIFEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIEIQNIFEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARY
140 150 160 170 180 190
160 170 180 190 200 210
pF1KSD HTLTKICAVQEIIEDCMKKQPSLPLSEDAHPSVAKINFVMCEVNKARGVLIALLMGVNNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTLTKICAVQEIIEDCMKKQPSLPLSEDAHPSVAKINFVMCEVNKARGVLIALLMGVNNN
200 210 220 230 240 250
220 230 240 250 260 270
pF1KSD ETCRHLSCVLSGLIADLDALDVCGRTEIRNYRREVVEDINKLLKYLDLEEEADTTKAFDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETCRHLSCVLSGLIADLDALDVCGRTEIRNYRREVVEDINKLLKYLDLEEEADTTKAFDL
260 270 280 290 300 310
280 290 300 310 320 330
pF1KSD RQNHSILKIEKVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQNHSILKIEKVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIRE
320 330 340 350 360 370
340 350 360 370 380 390
pF1KSD ARRRAVIEVQTLITYIDLKEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFDGNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARRRAVIEVQTLITYIDLKEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFDGNR
380 390 400 410 420 430
400 410 420 430 440
pF1KSD TDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYLDLKSDEWEY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYLDLKSDEWEY
440 450 460 470 480
>>XP_005270344 (OMIM: 603883,612954,613881) PREDICTED: B (574 aa)
initn: 418 init1: 222 opt: 230 Z-score: 233.1 bits: 52.7 E(85289): 3e-06
Smith-Waterman score: 230; 35.5% identity (79.6% similar) in 93 aa overlap (6-97:417-509)
10 20 30
pF1KSD MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSD
.::.. ... : ..:...:: : .: : .
XP_005 KSVATEERAAPSTAPAEATPPKPGEAEAPPKHPGVLKVEAILEKVQGLEQAVDNFEGKKT
390 400 410 420 430 440
40 50 60 70 80 90
pF1KSD DKNYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNA-NHPHRIEI
::.: .:. :::.:. .:::: ::..:..:::. ...... .:..:::.: . : ....
XP_005 DKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKLEQKAIDVPGQVQV
450 460 470 480 490 500
100 110 120 130 140 150
pF1KSD QNIFEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARYHTLT
..
XP_005 YELQPSNLEADQPLQAIMEMGAVAADKGKKNAGNAEDPHTETQQPEATAAATSNPSSMTD
510 520 530 540 550 560
>>NP_004272 (OMIM: 603883,612954,613881) BAG family mole (575 aa)
initn: 282 init1: 222 opt: 230 Z-score: 233.1 bits: 52.7 E(85289): 3e-06
Smith-Waterman score: 230; 35.5% identity (79.6% similar) in 93 aa overlap (6-97:418-510)
10 20 30
pF1KSD MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSD
.::.. ... : ..:...:: : .: : .
NP_004 KSVATEERAAPSTAPAEATPPKPGEAEAPPKHPGVLKVEAILEKVQGLEQAVDNFEGKKT
390 400 410 420 430 440
40 50 60 70 80 90
pF1KSD DKNYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNA-NHPHRIEI
::.: .:. :::.:. .:::: ::..:..:::. ...... .:..:::.: . : ....
NP_004 DKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKLEQKAIDVPGQVQV
450 460 470 480 490 500
100 110 120 130 140 150
pF1KSD QNIFEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARYHTLT
..
NP_004 YELQPSNLEADQPLQAIMEMGAVAADKGKKNAGNAEDPHTETQQPEATAAATSNPSSMTD
510 520 530 540 550 560
>>NP_001191807 (OMIM: 603884) BAG family molecular chape (421 aa)
initn: 377 init1: 200 opt: 200 Z-score: 205.8 bits: 47.2 E(85289): 0.0001
Smith-Waterman score: 200; 41.6% identity (79.2% similar) in 77 aa overlap (8-84:342-418)
10 20 30
pF1KSD MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDK
:::... .. ..:. .::.: : : . ::
NP_001 YGNATSDHPNNQDQSSSLPEECVPSDESTPPSIKKIIHVLEKVQYLEQEVEEFVGKKTDK
320 330 340 350 360 370
40 50 60 70 80 90
pF1KSD NYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNI
: ::..:::.:.:.:::.: :. ...::::.:. . . .:..::.
NP_001 AYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKLEKKGL
380 390 400 410 420
100 110 120 130 140 150
pF1KSD FEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKIC
>>NP_004865 (OMIM: 603884) BAG family molecular chaperon (457 aa)
initn: 377 init1: 200 opt: 200 Z-score: 205.2 bits: 47.2 E(85289): 0.00011
Smith-Waterman score: 200; 41.6% identity (79.2% similar) in 77 aa overlap (8-84:378-454)
10 20 30
pF1KSD MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDK
:::... .. ..:. .::.: : : . ::
NP_004 YGNATSDHPNNQDQSSSLPEECVPSDESTPPSIKKIIHVLEKVQYLEQEVEEFVGKKTDK
350 360 370 380 390 400
40 50 60 70 80 90
pF1KSD NYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNI
: ::..:::.:.:.:::.: :. ...::::.:. . . .:..::.
NP_004 AYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKLEKKGL
410 420 430 440 450
100 110 120 130 140 150
pF1KSD FEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKIC
447 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:52:09 2016 done: Thu Nov 3 03:52:10 2016
Total Scan time: 7.920 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]