FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0875, 621 aa
  1>>>pF1KSDA0875 621 - 621 aa - 621 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6732+/-0.00106; mu= 16.7022+/- 0.063
 mean_var=64.6071+/-12.898, 0's: 0 Z-trim(102.7): 16  B-trim: 59 in 1/50
 Lambda= 0.159564
 statistics sampled from 7056 (7060) to 7056 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.581), E-opt: 0.2 (0.217), width:  16
 Scan time:  3.100

The best scores are:                                      opt bits E(32554)
CCDS44989.1 FBXO21 gene_id:23014|Hs108|chr12       ( 621) 4189 973.7       0
CCDS9184.1 FBXO21 gene_id:23014|Hs108|chr12        ( 628) 4165 968.1       0


>>CCDS44989.1 FBXO21 gene_id:23014|Hs108|chr12            (621 aa)
 initn: 4189 init1: 4189 opt: 4189  Z-score: 5207.3  bits: 973.7 E(32554):    0
Smith-Waterman score: 4189; 100.0% identity (100.0% similar) in 621 aa overlap (1-621:1-621)

               10        20        30        40        50        60
pF1KSD MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DQVQLLLLQARLYFHLGIWPEKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DQVQLLLLQARLYFHLGIWPEKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD VEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD QPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPED
              550       560       570       580       590       600

              610       620 
pF1KSD LEFVYETVQNIYSAKKENIDE
       :::::::::::::::::::::
CCDS44 LEFVYETVQNIYSAKKENIDE
              610       620 

>>CCDS9184.1 FBXO21 gene_id:23014|Hs108|chr12             (628 aa)
 initn: 2937 init1: 2937 opt: 4165  Z-score: 5177.4  bits: 968.1 E(32554):    0
Smith-Waterman score: 4165; 98.9% identity (98.9% similar) in 628 aa overlap (1-621:1-628)

               10        20        30        40        50        60
pF1KSD MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP
              370       380       390       400       410       420

              430       440              450       460       470   
pF1KSD DQVQLLLLQARLYFHLGIWPEK-------VLDILQHIQTLDPGQHGAVGYLVQHTLEHIE
       ::::::::::::::::::::::       :::::::::::::::::::::::::::::::
CCDS91 DQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIE
              430       440       450       460       470       480

           480       490       500       510       520       530   
pF1KSD RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH
              490       500       510       520       530       540

           540       550       560       570       580       590   
pF1KSD SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL
              550       560       570       580       590       600

           600       610       620 
pF1KSD EIRYPEDLEFVYETVQNIYSAKKENIDE
       ::::::::::::::::::::::::::::
CCDS91 EIRYPEDLEFVYETVQNIYSAKKENIDE
              610       620        




621 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:52:40 2016 done: Thu Nov  3 03:52:41 2016
 Total Scan time:  3.100 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]