FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0887, 445 aa
  1>>>pF1KSDA0887 445 - 445 aa - 445 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7320+/-0.000946; mu= 2.9958+/- 0.057
 mean_var=242.4973+/-48.883, 0's: 0 Z-trim(113.0): 22  B-trim: 16 in 1/51
 Lambda= 0.082361
 statistics sampled from 13703 (13712) to 13703 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.421), width:  16
 Scan time:  3.480

The best scores are:                                      opt bits E(32554)
CCDS34296.1 FAF2 gene_id:23197|Hs108|chr5          ( 445) 3007 370.3 2.2e-102


>>CCDS34296.1 FAF2 gene_id:23197|Hs108|chr5               (445 aa)
 initn: 3007 init1: 3007 opt: 3007  Z-score: 1951.6  bits: 370.3 E(32554): 2.2e-102
Smith-Waterman score: 3007; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KSD MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LRADQEKERKKREERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSPDDPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LRADQEKERKKREERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSPDDPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCIPSEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCIPSEEW
              370       380       390       400       410       420

              430       440     
pF1KSD PNPPTLQEAGLSHTEVLFVQDLTDE
       :::::::::::::::::::::::::
CCDS34 PNPPTLQEAGLSHTEVLFVQDLTDE
              430       440     




445 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:58:43 2016 done: Thu Nov  3 03:58:43 2016
 Total Scan time:  3.480 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]