FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0887, 445 aa
  1>>>pF1KSDA0887 445 - 445 aa - 445 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1196+/-0.000415; mu= 0.4775+/- 0.026
 mean_var=260.4280+/-54.172, 0's: 0 Z-trim(121.1): 20  B-trim: 2088 in 2/52
 Lambda= 0.079475
 statistics sampled from 37225 (37248) to 37225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.437), width:  16
 Scan time: 10.550

The best scores are:                                      opt bits E(85289)
NP_055428 (OMIM: 616935) FAS-associated factor 2 [ ( 445) 3007 358.0 2.9e-98
XP_011532777 (OMIM: 616935) PREDICTED: FAS-associa ( 400) 2398 288.1 2.8e-77


>>NP_055428 (OMIM: 616935) FAS-associated factor 2 [Homo  (445 aa)
 initn: 3007 init1: 3007 opt: 3007  Z-score: 1885.0  bits: 358.0 E(85289): 2.9e-98
Smith-Waterman score: 3007; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KSD MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LRADQEKERKKREERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSPDDPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LRADQEKERKKREERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSPDDPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCIPSEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCIPSEEW
              370       380       390       400       410       420

              430       440     
pF1KSD PNPPTLQEAGLSHTEVLFVQDLTDE
       :::::::::::::::::::::::::
NP_055 PNPPTLQEAGLSHTEVLFVQDLTDE
              430       440     

>>XP_011532777 (OMIM: 616935) PREDICTED: FAS-associated   (400 aa)
 initn: 2684 init1: 2398 opt: 2398  Z-score: 1508.3  bits: 288.1 E(85289): 2.8e-77
Smith-Waterman score: 2598; 89.9% identity (89.9% similar) in 445 aa overlap (1-445:1-400)

               10        20        30        40        50        60
pF1KSD MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSV
       ::::::::::::::::::::::::::::::::::::::::::::                
XP_011 MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIE----------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KSD FNPPPSRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRF
                                    :::::::::::::::::::::::::::::::
XP_011 -----------------------------GLLGWGYYLIMLPFRFTYYTILDIFRFALRF
                                        50        60        70     

              130       140       150       160       170       180
pF1KSD IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGD
          80        90       100       110       120       130     

              190       200       210       220       230       240
pF1KSD DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DHQDSDEFCRNTLCAPEVISLINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKD
         140       150       160       170       180       190     

              250       260       270       280       290       300
pF1KSD RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLAS
         200       210       220       230       240       250     

              310       320       330       340       350       360
pF1KSD LRADQEKERKKREERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSPDDPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRADQEKERKKREERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSPDDPE
         260       270       280       290       300       310     

              370       380       390       400       410       420
pF1KSD SVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCIPSEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCIPSEEW
         320       330       340       350       360       370     

              430       440     
pF1KSD PNPPTLQEAGLSHTEVLFVQDLTDE
       :::::::::::::::::::::::::
XP_011 PNPPTLQEAGLSHTEVLFVQDLTDE
         380       390       400




445 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:58:44 2016 done: Thu Nov  3 03:58:45 2016
 Total Scan time: 10.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]