FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0907, 564 aa
  1>>>pF1KSDA0907 564 - 564 aa - 564 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.7182+/-0.00112; mu= -13.5426+/- 0.067
 mean_var=491.2694+/-100.444, 0's: 0 Z-trim(116.1): 26  B-trim: 459 in 1/54
 Lambda= 0.057865
 statistics sampled from 16646 (16662) to 16646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.512), width:  16
 Scan time:  4.440

The best scores are:                                      opt bits E(32554)
CCDS30885.1 KIAA0907 gene_id:22889|Hs108|chr1      ( 614) 3707 324.0 3.3e-88


>>CCDS30885.1 KIAA0907 gene_id:22889|Hs108|chr1           (614 aa)
 initn: 3707 init1: 3707 opt: 3707  Z-score: 1697.0  bits: 324.0 E(32554): 3.3e-88
Smith-Waterman score: 3707; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)

               10        20        30        40        50        60
pF1KSD MSAGSATHPGAGGRRSKWDQPAPAPLLFLPPAAPGGEVTSSGGSPGGTTAAPSGALDAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSAGSATHPGAGGRRSKWDQPAPAPLLFLPPAAPGGEVTSSGGSPGGTTAAPSGALDAAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD AVAAKINAMLMAKGKLKPTQNASEKLQAPGKGLTSNKSKDDLVVAEVEINDVPLTCRNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AVAAKINAMLMAKGKLKPTQNASEKLQAPGKGLTSNKSKDDLVVAEVEINDVPLTCRNLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD TRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGPGDRPLYLHVQGQTRELVDRAVNRIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGPGDRPLYLHVQGQTRELVDRAVNRIKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD IITNGVVKAATGTSPTFNGATVTVYHQPAPIAQLSPAVSQKPPFQSGMHYVQDKLFVGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IITNGVVKAATGTSPTFNGATVTVYHQPAPIAQLSPAVSQKPPFQSGMHYVQDKLFVGLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD HAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KPEGLAAAKKLCENLLQTVHAEYSRFVNQINTAVPLPGYTQPSAISSVPPQPPYYPSNGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KPEGLAAAKKLCENLLQTVHAEYSRFVNQINTAVPLPGYTQPSAISSVPPQPPYYPSNGY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QSGYPVVPPPQQPVQPPYGVPSIVPPAVSLAPGVLPALPTGVPPVPTQYPITQVQPPAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QSGYPVVPPPQQPVQPPYGVPSIVPPAVSLAPGVLPALPTGVPPVPTQYPITQVQPPAST
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD GQSPMGGPFIPAAPVKTALPAGPQPQPQPQPPLPSQPQAQKRRFTEELPDERESGLLGYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GQSPMGGPFIPAAPVKTALPAGPQPQPQPQPPLPSQPQAQKRRFTEELPDERESGLLGYQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD HGPIHMTNLGTGFSSQNEIEGAGSKPASSSGKERERDRQLMPPPAFPVTGIKTESDERNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HGPIHMTNLGTGFSSQNEIEGAGSKPASSSGKERERDRQLMPPPAFPVTGIKTESDERNG
              490       500       510       520       530       540

              550       560                                        
pF1KSD SGTLTGSHGECDIAGGTGEWLRLV                                    
       ::::::::                                                    
CCDS30 SGTLTGSHDYPAKKMKTTEKGFGLVAYAADSSDEEEEHGGHKNASSFPQGWSLGYQYPSS
              550       560       570       580       590       600




564 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:10:13 2016 done: Thu Nov  3 04:10:14 2016
 Total Scan time:  4.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]