Result of FASTA (omim) for
pF1KSDA0920
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0920, 1103 aa
1>>>pF1KSDA0920 1103 - 1103 aa - 1103 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.8085+/-0.00038; mu= -1.5498+/- 0.024
mean_var=284.5464+/-57.044, 0's: 0 Z-trim(122.3): 9 B-trim: 19 in 1/58
Lambda= 0.076032
statistics sampled from 40149 (40159) to 40149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.471), width: 16
Scan time: 14.250
The best scores are: opt bits E(85289)
NP_001185585 (OMIM: 604582) A-kinase anchor protei ( 961) 5989 670.9 9.9e-192
NP_001004065 (OMIM: 604582) A-kinase anchor protei ( 948) 5708 640.1 1.9e-182
NP_001130034 (OMIM: 604582) A-kinase anchor protei ( 859) 5457 612.5 3.3e-174
NP_060204 (OMIM: 610182) palmdelphin [Homo sapiens ( 551) 391 56.7 4.4e-07
XP_005259623 (OMIM: 608134) PREDICTED: paralemmin- ( 386) 368 54.1 1.9e-06
NP_002570 (OMIM: 608134) paralemmin-1 isoform 1 [H ( 387) 368 54.1 1.9e-06
XP_005259622 (OMIM: 608134) PREDICTED: paralemmin- ( 389) 368 54.1 1.9e-06
NP_001035224 (OMIM: 608134) paralemmin-1 isoform 2 ( 343) 351 52.2 6.2e-06
XP_016882339 (OMIM: 608134) PREDICTED: paralemmin- ( 345) 351 52.2 6.3e-06
>>NP_001185585 (OMIM: 604582) A-kinase anchor protein 2 (961 aa)
initn: 5989 init1: 5989 opt: 5989 Z-score: 3563.2 bits: 670.9 E(85289): 9.9e-192
Smith-Waterman score: 5996; 96.7% identity (97.3% similar) in 950 aa overlap (155-1103:22-961)
130 140 150 160 170 180
pF1KSD GFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWENVLLKEGESASNAT
::: ::. : : .. .
NP_001 MRWPQPGAAARLPPESPGPPESPGPPEREAAAARRW------TGAEPQDCA
10 20 30 40
190 200 210 220 230 240
pF1KSD ETSG-PDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVAECKS
:: :. :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSGRPE----KPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVAECKS
50 60 70 80 90 100
250 260 270 280 290 300
pF1KSD VPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGT
110 120 130 140 150 160
310 320 330 340 350 360
pF1KSD YNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTN
170 180 190 200 210 220
370 380 390 400 410 420
pF1KSD GHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK
230 240 250 260 270 280
430 440 450 460 470 480
pF1KSD LFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEE
290 300 310 320 330 340
490 500 510 520 530 540
pF1KSD QLDEEHLESHKKYKERKERRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLDEEHLESHKKYKERKERRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKA
350 360 370 380 390 400
550 560 570 580 590 600
pF1KSD KEDIVTEQIDFSAARKQFQLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDIVTEQIDFSAARKQFQLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPR
410 420 430 440 450 460
610 620 630 640 650 660
pF1KSD PPSVGGPPEDSGASAAKGQKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPSVGGPPEDSGASAAKGQKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWA
470 480 490 500 510 520
670 680 690 700 710 720
pF1KSD EDGEFTSARAVLTVVKDDDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDGEFTSARAVLTVVKDDDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLS
530 540 550 560 570 580
730 740 750 760 770 780
pF1KSD NDFSMDNISDSGASNETTNALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDFSMDNISDSGASNETTNALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSP
590 600 610 620 630 640
790 800 810 820 830 840
pF1KSD SSTLGDSPLVDDPLEYQAGLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSTLGDSPLVDDPLEYQAGLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEA
650 660 670 680 690 700
850 860 870 880 890 900
pF1KSD AAFGSEKPQSMFEPPQVSSPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAFGSEKPQSMFEPPQVSSPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINME
710 720 730 740 750 760
910 920 930 940 950 960
pF1KSD ETRPEGSYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETRPEGSYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQER
770 780 790 800 810 820
970 980 990 1000 1010 1020
pF1KSD EEELKRQRQVLQSTQSPRTKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEELKRQRQVLQSTQSPRTKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAP
830 840 850 860 870 880
1030 1040 1050 1060 1070 1080
pF1KSD EEAAGTQRPKNLMQTLMEDYETHKSKRRERMDDSSYTSKLLSCKVTSEVLEATRVNRRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEAAGTQRPKNLMQTLMEDYETHKSKRRERMDDSSYTSKLLSCKVTSEVLEATRVNRRKS
890 900 910 920 930 940
1090 1100
pF1KSD ALALRWEAGIYANQEEEDNE
::::::::::::::::::::
NP_001 ALALRWEAGIYANQEEEDNE
950 960
>>NP_001004065 (OMIM: 604582) A-kinase anchor protein 2 (948 aa)
initn: 5708 init1: 5708 opt: 5708 Z-score: 3396.7 bits: 640.1 E(85289): 1.9e-182
Smith-Waterman score: 5881; 95.4% identity (95.9% similar) in 950 aa overlap (155-1103:22-948)
130 140 150 160 170 180
pF1KSD GFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWENVLLKEGESASNAT
::: ::. : : .. .
NP_001 MRWPQPGAAARLPPESPGPPESPGPPEREAAAARRW------TGAEPQDCA
10 20 30 40
190 200 210 220 230 240
pF1KSD ETSG-PDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVAECKS
:: :. :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSGRPE----KPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVAECKS
50 60 70 80 90 100
250 260 270 280 290 300
pF1KSD VPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGT
110 120 130 140 150 160
310 320 330 340 350 360
pF1KSD YNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTN
170 180 190 200 210 220
370 380 390 400 410 420
pF1KSD GHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK
230 240 250 260 270 280
430 440 450 460 470 480
pF1KSD LFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEE
290 300 310 320 330 340
490 500 510 520 530 540
pF1KSD QLDEEHLESHKKYKERKERRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLDEEHLESHKKYKERKERRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKA
350 360 370 380 390 400
550 560 570 580 590 600
pF1KSD KEDIVTEQIDFSAARKQFQLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDIVTEQIDFSAARKQFQLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPR
410 420 430 440 450 460
610 620 630 640 650 660
pF1KSD PPSVGGPPEDSGASAAKGQKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPSVGGPPEDSGASAAKGQKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWA
470 480 490 500 510 520
670 680 690 700 710 720
pF1KSD EDGEFTSARAVLTVVKDDDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDGEFTSARAVLTVVKDDDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLS
530 540 550 560 570 580
730 740 750 760 770 780
pF1KSD NDFSMDNISDSGASNETTNALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDFSMDNISDSGASNETTNALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSP
590 600 610 620 630 640
790 800 810 820 830 840
pF1KSD SSTLGDSPLVDDPLEYQAGLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSTLGDSPLVDDPLEYQAGLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEA
650 660 670 680 690 700
850 860 870 880 890 900
pF1KSD AAFGSEKPQSMFEPPQVSSPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAFGSEKPQSMFEPPQVSSPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINME
710 720 730 740 750 760
910 920 930 940 950 960
pF1KSD ETRPEGSYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETRPEGSYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQER
770 780 790 800 810 820
970 980 990 1000 1010 1020
pF1KSD EEELKRQRQVLQSTQSPRTKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEELKRQRQVLQSTQSPRTKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAP
830 840 850 860 870 880
1030 1040 1050 1060 1070 1080
pF1KSD EEAAGTQRPKNLMQTLMEDYETHKSKRRERMDDSSYTSKLLSCKVTSEVLEATRVNRRKS
::::::::::::::::::::::::::::::::::: ::::::::::::
NP_001 EEAAGTQRPKNLMQTLMEDYETHKSKRRERMDDSS-------------VLEATRVNRRKS
890 900 910 920
1090 1100
pF1KSD ALALRWEAGIYANQEEEDNE
::::::::::::::::::::
NP_001 ALALRWEAGIYANQEEEDNE
930 940
>>NP_001130034 (OMIM: 604582) A-kinase anchor protein 2 (859 aa)
initn: 5457 init1: 5457 opt: 5457 Z-score: 3248.5 bits: 612.5 E(85289): 3.3e-174
Smith-Waterman score: 5623; 98.5% identity (98.5% similar) in 872 aa overlap (232-1103:1-859)
210 220 230 240 250 260
pF1KSD DDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFY
::::::::::::::::::::::::::::::
NP_001 MEIEVSVAECKSVPGITSTPHPMDHPSAFY
10 20 30
270 280 290 300 310 320
pF1KSD SPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGL
40 50 60 70 80 90
330 340 350 360 370 380
pF1KSD SPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTNGHSPSQPRDALGDSLQVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTNGHSPSQPRDALGDSLQVP
100 110 120 130 140 150
390 400 410 420 430 440
pF1KSD VSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSKLFEDDEHEKEQYCIRKVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSKLFEDDEHEKEQYCIRKVR
160 170 180 190 200 210
450 460 470 480 490 500
pF1KSD PSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHLESHKKYKERKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHLESHKKYKERKE
220 230 240 250 260 270
510 520 530 540 550 560
pF1KSD RRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKAKEDIVTEQIDFSAARKQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKAKEDIVTEQIDFSAARKQF
280 290 300 310 320 330
570 580 590 600 610 620
pF1KSD QLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPRPPSVGGPPEDSGASAAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPRPPSVGGPPEDSGASAAKG
340 350 360 370 380 390
630 640 650 660 670 680
pF1KSD QKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDD
400 410 420 430 440 450
690 700 710 720 730 740
pF1KSD DHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETT
460 470 480 490 500 510
750 760 770 780 790 800
pF1KSD NALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSPSSTLGDSPLVDDPLEYQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSPSSTLGDSPLVDDPLEYQA
520 530 540 550 560 570
810 820 830 840 850 860
pF1KSD GLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVS
580 590 600 610 620 630
870 880 890 900 910 920
pF1KSD SPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINMEETRPEGSYFSKYSEAAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINMEETRPEGSYFSKYSEAAEL
640 650 660 670 680 690
930 940 950 960 970 980
pF1KSD RSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVLQSTQSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVLQSTQSPR
700 710 720 730 740 750
990 1000 1010 1020 1030 1040
pF1KSD TKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLME
760 770 780 790 800 810
1050 1060 1070 1080 1090 1100
pF1KSD DYETHKSKRRERMDDSSYTSKLLSCKVTSEVLEATRVNRRKSALALRWEAGIYANQEEED
::::::::::::::::: ::::::::::::::::::::::::::::::
NP_001 DYETHKSKRRERMDDSS-------------VLEATRVNRRKSALALRWEAGIYANQEEED
820 830 840 850
pF1KSD NE
::
NP_001 NE
>>NP_060204 (OMIM: 610182) palmdelphin [Homo sapiens] (551 aa)
initn: 295 init1: 226 opt: 391 Z-score: 248.1 bits: 56.7 E(85289): 4.4e-07
Smith-Waterman score: 391; 28.2% identity (53.7% similar) in 404 aa overlap (1-385:1-387)
10 20 30 40 50 60
pF1KSD MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIPAGTA
: :::: : :::::..::: : :: :: ...:. : :: :.:.:::::::.:: .:
NP_060 MEEAELVKGRLQAITDKRKIQEEISQKRLKIEEDKLKHQHLKKKALREKWLLDGISSG--
10 20 30 40 50
70 80 90 100 110 120
pF1KSD EEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQISAKEQIILEKLKETEKSFK
.:.: ..:...:. ... ::..: :::.::: ::. : :::.::. ::.::: :.. .
NP_060 KEQEEMKKQNQQDQHQIQVLEQSILRLEKEIQDLEKAELQISTKEEAILKKLKSIERTTE
60 70 80 90 100 110
130 140 150 160 170
pF1KSD DFQKGFS----STDGDAVNYISSQLPDLP--ILCSRTAEP---SPGQDGTSRAAGVGWEN
:. .. . .... : ...:::: . :: . .: .: : . :
NP_060 DIIRSVKVEREERAEESIEDIYANIPDLPKSYIPSRLRKEINEEKEDDEQNRKALYAMEI
120 130 140 150 160 170
180 190 200 210 220
pF1KSD VLLKEGESASNATETSGPDMTIKKPPQLSEDDIW---LKSEGDNYSATLLEPAASSLSPD
. :. ... ... .: : : ::. .: :. ... . : . .
NP_060 KVEKDLKTGESTVLSSIP---------LPSDDFKGTGIKVYDDGQKSVYAVSSNHSAAYN
180 190 200 210 220
230 240 250 260 270 280
pF1KSD HKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDN--DVAREIRY
. : : : . .. : .. :. : : ..:.. . ..:.
NP_060 GTDGLAPVEVEELLRQASERNSKSPTEYHEPVYANPFYRPTTPQRETVTPGPNFQERIKI
230 240 250 260 270 280
290 300 310 320 330 340
pF1KSD LDEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGLSPPVHEAT---QPEPTERTASRQAP
. : . .: . . :: : . . .. . : : . : : .: ...
NP_060 KTNGLGIGVNES-IHNMGNGLSEERGNNFNHISPIPPVPHPRSVIQQAEEKLHTPQKRLM
290 300 310 320 330 340
350 360 370 380 390 400
pF1KSD PHIELSNSSPDPMAEAERTNGHSPS-QPRDAL-GDSLQVPVSPSSTTSSRCSSRDGEFTL
: :: : : . . : .::... : : . ::.
NP_060 TPWEESNVMQDKDAPSPK-----PRLSPRETIFGKSEHQNSSPTCQEDEEDVRYNIVHSL
350 360 370 380 390 400
410 420 430 440 450 460
pF1KSD TTLKKEAKFELRAFHEDKKPSKLFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQA
NP_060 PPDINDTEPVTMIFMGYQQAEDSEEDKKFLTGYDGIIHAELVVIDDEEEEDEGEAEKPSY
410 420 430 440 450 460
>>XP_005259623 (OMIM: 608134) PREDICTED: paralemmin-1 is (386 aa)
initn: 384 init1: 346 opt: 368 Z-score: 236.8 bits: 54.1 E(85289): 1.9e-06
Smith-Waterman score: 368; 32.6% identity (61.6% similar) in 258 aa overlap (2-250:5-255)
10 20 30 40 50
pF1KSD MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIPA
::. ..:::::::::::::.:::.::.::... ::: :::.:::.:::.: :.
XP_005 MVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTPS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD GTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----ILEK
...: .: ::: ..:: ... :::...:::.::..:: .: .:::. .
XP_005 SASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD LKETEKSFKDFQKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWEN
: . . ..: . . . .... . :. ::.. :: . .:: . :
XP_005 APSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMM----KAAMYSVEI
130 140 150 160 170
180 190 200 210 220
pF1KSD VLLKE---GESASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPD
.. :. ::. .. : : . . .. ::. . :. . . ..: .:: .
XP_005 TVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDE
180 190 200 210 220 230
230 240 250 260 270 280
pF1KSD HKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLD
. ::...: :. : . :
XP_005 LIHKADEVTLSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQ
240 250 260 270 280 290
>>NP_002570 (OMIM: 608134) paralemmin-1 isoform 1 [Homo (387 aa)
initn: 384 init1: 346 opt: 368 Z-score: 236.8 bits: 54.1 E(85289): 1.9e-06
Smith-Waterman score: 368; 32.6% identity (61.6% similar) in 258 aa overlap (2-250:6-256)
10 20 30 40 50
pF1KSD MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIP
::. ..:::::::::::::.:::.::.::... ::: :::.:::.:::.: :
NP_002 MEVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD AGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----ILE
....: .: ::: ..:: ... :::...:::.::..:: .: .:::. .
NP_002 SSASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD KLKETEKSFKDFQKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWE
: . . ..: . . . .... . :. ::.. :: . .:: . :
NP_002 PAPSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMM----KAAMYSVE
130 140 150 160 170
180 190 200 210 220
pF1KSD NVLLKE---GESASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSLSP
.. :. ::. .. : : . . .. ::. . :. . . ..: .::
NP_002 ITVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVD
180 190 200 210 220 230
230 240 250 260 270 280
pF1KSD DHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYL
. . ::...: :. : . :
NP_002 ELIHKADEVTLSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPG
240 250 260 270 280 290
>>XP_005259622 (OMIM: 608134) PREDICTED: paralemmin-1 is (389 aa)
initn: 384 init1: 346 opt: 368 Z-score: 236.7 bits: 54.1 E(85289): 1.9e-06
Smith-Waterman score: 368; 32.6% identity (61.6% similar) in 258 aa overlap (2-250:8-258)
10 20 30 40 50
pF1KSD MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQG
::. ..:::::::::::::.:::.::.::... ::: :::.:::.:::.:
XP_005 MLPRVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEG
10 20 30 40 50 60
60 70 80 90 100
pF1KSD IPAGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----I
:....: .: ::: ..:: ... :::...:::.::..:: .: .:::. .
XP_005 TPSSASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPV
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD LEKLKETEKSFKDFQKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVG
: . . ..: . . . .... . :. ::.. :: . .:: .
XP_005 RAPAPSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMM----KAAMYS
130 140 150 160 170
170 180 190 200 210 220
pF1KSD WENVLLKE---GESASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSL
: .. :. ::. .. : : . . .. ::. . :. . . ..: .::
XP_005 VEITVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSE
180 190 200 210 220 230
230 240 250 260 270 280
pF1KSD SPDHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIR
. . ::...: :. : . :
XP_005 VDELIHKADEVTLSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQ
240 250 260 270 280 290
>>NP_001035224 (OMIM: 608134) paralemmin-1 isoform 2 [Ho (343 aa)
initn: 384 init1: 346 opt: 351 Z-score: 227.5 bits: 52.2 E(85289): 6.2e-06
Smith-Waterman score: 374; 29.2% identity (59.4% similar) in 367 aa overlap (2-356:6-330)
10 20 30 40 50
pF1KSD MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIP
::. ..:::::::::::::.:::.::.::... ::: :::.:::.:::.: :
NP_001 MEVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD AGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----ILE
....: .: ::: ..:: ... :::...:::.::..:: .: .:::. .
NP_001 SSASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD KLKETEKSFKDFQKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWE
: . . ..: . . . .... . :. ::.. :: . .. .:. :
NP_001 PAPSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMMKAVVHAVDGTAE
130 140 150 160 170
180 190 200 210 220
pF1KSD NVLLKEGESASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPA---ASSLSP
: : ...:. : :.: :.. :. :.. .:. . : :. .:
NP_001 N-----GIHPLSSSEV---DELIHK-----ADEVTLSEAGSTAGAAETRGAVEGAARTTP
180 190 200 210 220
230 240 250 260 270 280
pF1KSD DHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYL
... :.. .. . :: ... : .:. :: . .. ... :. .... :
NP_001 SRR----EITGVQAQ--PGEATSGPPGIQPGQ--EPPVTMIFMGYQNVEDEAETKKVLGL
230 240 250 260 270
290 300 310 320 330 340
pF1KSD DEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASR---QAPP
.... :. ... ... :: .:: :..: ::: .::: :: :
NP_001 QDTITAELV--VIE---DAAEPKEP---------APPNGSAAEP-PTE-AASREENQAGP
280 290 300 310 320
350 360 370 380 390 400
pF1KSD HIELSNSSPDPMAEAERTNGHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTL
: ..:.:. .
NP_001 --EATTSDPQDLDMKKHRCKCCSIM
330 340
>>XP_016882339 (OMIM: 608134) PREDICTED: paralemmin-1 is (345 aa)
initn: 384 init1: 346 opt: 351 Z-score: 227.4 bits: 52.2 E(85289): 6.3e-06
Smith-Waterman score: 374; 29.2% identity (59.4% similar) in 367 aa overlap (2-356:8-332)
10 20 30 40 50
pF1KSD MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQG
::. ..:::::::::::::.:::.::.::... ::: :::.:::.:::.:
XP_016 MLPRVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEG
10 20 30 40 50 60
60 70 80 90 100
pF1KSD IPAGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----I
:....: .: ::: ..:: ... :::...:::.::..:: .: .:::. .
XP_016 TPSSASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPV
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD LEKLKETEKSFKDFQKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVG
: . . ..: . . . .... . :. ::.. :: . .. .:.
XP_016 RAPAPSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMMKAVVHAVDGT
130 140 150 160 170
170 180 190 200 210 220
pF1KSD WENVLLKEGESASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPA---ASSL
:: : ...:. : :.: :.. :. :.. .:. . : :.
XP_016 AEN-----GIHPLSSSEV---DELIHK-----ADEVTLSEAGSTAGAAETRGAVEGAART
180 190 200 210 220
230 240 250 260 270 280
pF1KSD SPDHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIR
.:... :.. .. . :: ... : .:. :: . .. ... :. ....
XP_016 TPSRR----EITGVQAQ--PGEATSGPPGIQPGQ--EPPVTMIFMGYQNVEDEAETKKVL
230 240 250 260 270
290 300 310 320 330 340
pF1KSD YLDEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASR---QA
:.... :. ... ... :: .:: :..: ::: .::: ::
XP_016 GLQDTITAELV--VIE---DAAEPKEP---------APPNGSAAEP-PTE-AASREENQA
280 290 300 310 320
350 360 370 380 390 400
pF1KSD PPHIELSNSSPDPMAEAERTNGHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLT
: : ..:.:. .
XP_016 GP--EATTSDPQDLDMKKHRCKCCSIM
330 340
1103 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:12:14 2016 done: Thu Nov 3 04:12:16 2016
Total Scan time: 14.250 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]