Result of FASTA (omim) for pF1KSDA0920
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0920, 1103 aa
  1>>>pF1KSDA0920 1103 - 1103 aa - 1103 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8085+/-0.00038; mu= -1.5498+/- 0.024
 mean_var=284.5464+/-57.044, 0's: 0 Z-trim(122.3): 9  B-trim: 19 in 1/58
 Lambda= 0.076032
 statistics sampled from 40149 (40159) to 40149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.471), width:  16
 Scan time: 14.250

The best scores are:                                      opt bits E(85289)
NP_001185585 (OMIM: 604582) A-kinase anchor protei ( 961) 5989 670.9 9.9e-192
NP_001004065 (OMIM: 604582) A-kinase anchor protei ( 948) 5708 640.1 1.9e-182
NP_001130034 (OMIM: 604582) A-kinase anchor protei ( 859) 5457 612.5 3.3e-174
NP_060204 (OMIM: 610182) palmdelphin [Homo sapiens ( 551)  391 56.7 4.4e-07
XP_005259623 (OMIM: 608134) PREDICTED: paralemmin- ( 386)  368 54.1 1.9e-06
NP_002570 (OMIM: 608134) paralemmin-1 isoform 1 [H ( 387)  368 54.1 1.9e-06
XP_005259622 (OMIM: 608134) PREDICTED: paralemmin- ( 389)  368 54.1 1.9e-06
NP_001035224 (OMIM: 608134) paralemmin-1 isoform 2 ( 343)  351 52.2 6.2e-06
XP_016882339 (OMIM: 608134) PREDICTED: paralemmin- ( 345)  351 52.2 6.3e-06


>>NP_001185585 (OMIM: 604582) A-kinase anchor protein 2   (961 aa)
 initn: 5989 init1: 5989 opt: 5989  Z-score: 3563.2  bits: 670.9 E(85289): 9.9e-192
Smith-Waterman score: 5996; 96.7% identity (97.3% similar) in 950 aa overlap (155-1103:22-961)

          130       140       150       160       170       180    
pF1KSD GFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWENVLLKEGESASNAT
                                     :::      ::.  :       :   .. .
NP_001          MRWPQPGAAARLPPESPGPPESPGPPEREAAAARRW------TGAEPQDCA
                        10        20        30              40     

           190       200       210       220       230       240   
pF1KSD ETSG-PDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVAECKS
         :: :.    :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSGRPE----KPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVAECKS
          50            60        70        80        90       100 

           250       260       270       280       290       300   
pF1KSD VPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGT
             110       120       130       140       150       160 

           310       320       330       340       350       360   
pF1KSD YNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTN
             170       180       190       200       210       220 

           370       380       390       400       410       420   
pF1KSD GHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK
             230       240       250       260       270       280 

           430       440       450       460       470       480   
pF1KSD LFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEE
             290       300       310       320       330       340 

           490       500       510       520       530       540   
pF1KSD QLDEEHLESHKKYKERKERRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLDEEHLESHKKYKERKERRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKA
             350       360       370       380       390       400 

           550       560       570       580       590       600   
pF1KSD KEDIVTEQIDFSAARKQFQLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDIVTEQIDFSAARKQFQLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPR
             410       420       430       440       450       460 

           610       620       630       640       650       660   
pF1KSD PPSVGGPPEDSGASAAKGQKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPSVGGPPEDSGASAAKGQKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWA
             470       480       490       500       510       520 

           670       680       690       700       710       720   
pF1KSD EDGEFTSARAVLTVVKDDDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDGEFTSARAVLTVVKDDDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLS
             530       540       550       560       570       580 

           730       740       750       760       770       780   
pF1KSD NDFSMDNISDSGASNETTNALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDFSMDNISDSGASNETTNALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSP
             590       600       610       620       630       640 

           790       800       810       820       830       840   
pF1KSD SSTLGDSPLVDDPLEYQAGLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSTLGDSPLVDDPLEYQAGLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEA
             650       660       670       680       690       700 

           850       860       870       880       890       900   
pF1KSD AAFGSEKPQSMFEPPQVSSPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAFGSEKPQSMFEPPQVSSPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINME
             710       720       730       740       750       760 

           910       920       930       940       950       960   
pF1KSD ETRPEGSYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETRPEGSYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQER
             770       780       790       800       810       820 

           970       980       990      1000      1010      1020   
pF1KSD EEELKRQRQVLQSTQSPRTKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEELKRQRQVLQSTQSPRTKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAP
             830       840       850       860       870       880 

          1030      1040      1050      1060      1070      1080   
pF1KSD EEAAGTQRPKNLMQTLMEDYETHKSKRRERMDDSSYTSKLLSCKVTSEVLEATRVNRRKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEAAGTQRPKNLMQTLMEDYETHKSKRRERMDDSSYTSKLLSCKVTSEVLEATRVNRRKS
             890       900       910       920       930       940 

          1090      1100   
pF1KSD ALALRWEAGIYANQEEEDNE
       ::::::::::::::::::::
NP_001 ALALRWEAGIYANQEEEDNE
             950       960 

>>NP_001004065 (OMIM: 604582) A-kinase anchor protein 2   (948 aa)
 initn: 5708 init1: 5708 opt: 5708  Z-score: 3396.7  bits: 640.1 E(85289): 1.9e-182
Smith-Waterman score: 5881; 95.4% identity (95.9% similar) in 950 aa overlap (155-1103:22-948)

          130       140       150       160       170       180    
pF1KSD GFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWENVLLKEGESASNAT
                                     :::      ::.  :       :   .. .
NP_001          MRWPQPGAAARLPPESPGPPESPGPPEREAAAARRW------TGAEPQDCA
                        10        20        30              40     

           190       200       210       220       230       240   
pF1KSD ETSG-PDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVAECKS
         :: :.    :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSGRPE----KPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVAECKS
          50            60        70        80        90       100 

           250       260       270       280       290       300   
pF1KSD VPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGT
             110       120       130       140       150       160 

           310       320       330       340       350       360   
pF1KSD YNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTN
             170       180       190       200       210       220 

           370       380       390       400       410       420   
pF1KSD GHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK
             230       240       250       260       270       280 

           430       440       450       460       470       480   
pF1KSD LFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEE
             290       300       310       320       330       340 

           490       500       510       520       530       540   
pF1KSD QLDEEHLESHKKYKERKERRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLDEEHLESHKKYKERKERRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKA
             350       360       370       380       390       400 

           550       560       570       580       590       600   
pF1KSD KEDIVTEQIDFSAARKQFQLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDIVTEQIDFSAARKQFQLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPR
             410       420       430       440       450       460 

           610       620       630       640       650       660   
pF1KSD PPSVGGPPEDSGASAAKGQKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPSVGGPPEDSGASAAKGQKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWA
             470       480       490       500       510       520 

           670       680       690       700       710       720   
pF1KSD EDGEFTSARAVLTVVKDDDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDGEFTSARAVLTVVKDDDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLS
             530       540       550       560       570       580 

           730       740       750       760       770       780   
pF1KSD NDFSMDNISDSGASNETTNALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDFSMDNISDSGASNETTNALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSP
             590       600       610       620       630       640 

           790       800       810       820       830       840   
pF1KSD SSTLGDSPLVDDPLEYQAGLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSTLGDSPLVDDPLEYQAGLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEA
             650       660       670       680       690       700 

           850       860       870       880       890       900   
pF1KSD AAFGSEKPQSMFEPPQVSSPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAFGSEKPQSMFEPPQVSSPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINME
             710       720       730       740       750       760 

           910       920       930       940       950       960   
pF1KSD ETRPEGSYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETRPEGSYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQER
             770       780       790       800       810       820 

           970       980       990      1000      1010      1020   
pF1KSD EEELKRQRQVLQSTQSPRTKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEELKRQRQVLQSTQSPRTKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAP
             830       840       850       860       870       880 

          1030      1040      1050      1060      1070      1080   
pF1KSD EEAAGTQRPKNLMQTLMEDYETHKSKRRERMDDSSYTSKLLSCKVTSEVLEATRVNRRKS
       :::::::::::::::::::::::::::::::::::             ::::::::::::
NP_001 EEAAGTQRPKNLMQTLMEDYETHKSKRRERMDDSS-------------VLEATRVNRRKS
             890       900       910                    920        

          1090      1100   
pF1KSD ALALRWEAGIYANQEEEDNE
       ::::::::::::::::::::
NP_001 ALALRWEAGIYANQEEEDNE
      930       940        

>>NP_001130034 (OMIM: 604582) A-kinase anchor protein 2   (859 aa)
 initn: 5457 init1: 5457 opt: 5457  Z-score: 3248.5  bits: 612.5 E(85289): 3.3e-174
Smith-Waterman score: 5623; 98.5% identity (98.5% similar) in 872 aa overlap (232-1103:1-859)

             210       220       230       240       250       260 
pF1KSD DDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFY
                                     ::::::::::::::::::::::::::::::
NP_001                               MEIEVSVAECKSVPGITSTPHPMDHPSAFY
                                             10        20        30

             270       280       290       300       310       320 
pF1KSD SPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGL
               40        50        60        70        80        90

             330       340       350       360       370       380 
pF1KSD SPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTNGHSPSQPRDALGDSLQVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPVHEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTNGHSPSQPRDALGDSLQVP
              100       110       120       130       140       150

             390       400       410       420       430       440 
pF1KSD VSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSKLFEDDEHEKEQYCIRKVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSKLFEDDEHEKEQYCIRKVR
              160       170       180       190       200       210

             450       460       470       480       490       500 
pF1KSD PSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHLESHKKYKERKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHLESHKKYKERKE
              220       230       240       250       260       270

             510       520       530       540       550       560 
pF1KSD RRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKAKEDIVTEQIDFSAARKQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKAKEDIVTEQIDFSAARKQF
              280       290       300       310       320       330

             570       580       590       600       610       620 
pF1KSD QLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPRPPSVGGPPEDSGASAAKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPRPPSVGGPPEDSGASAAKG
              340       350       360       370       380       390

             630       640       650       660       670       680 
pF1KSD QKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKSPGALETPSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDD
              400       410       420       430       440       450

             690       700       710       720       730       740 
pF1KSD DHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETT
              460       470       480       490       500       510

             750       760       770       780       790       800 
pF1KSD NALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSPSSTLGDSPLVDDPLEYQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NALQENSLADFSLPQTPQTDNPSEGRGEGVSKSFSDHGFYSPSSTLGDSPLVDDPLEYQA
              520       530       540       550       560       570

             810       820       830       840       850       860 
pF1KSD GLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVS
              580       590       600       610       620       630

             870       880       890       900       910       920 
pF1KSD SPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINMEETRPEGSYFSKYSEAAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINMEETRPEGSYFSKYSEAAEL
              640       650       660       670       680       690

             930       940       950       960       970       980 
pF1KSD RSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVLQSTQSPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVLQSTQSPR
              700       710       720       730       740       750

             990      1000      1010      1020      1030      1040 
pF1KSD TKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLME
              760       770       780       790       800       810

            1050      1060      1070      1080      1090      1100 
pF1KSD DYETHKSKRRERMDDSSYTSKLLSCKVTSEVLEATRVNRRKSALALRWEAGIYANQEEED
       :::::::::::::::::             ::::::::::::::::::::::::::::::
NP_001 DYETHKSKRRERMDDSS-------------VLEATRVNRRKSALALRWEAGIYANQEEED
              820                    830       840       850       

         
pF1KSD NE
       ::
NP_001 NE
         

>>NP_060204 (OMIM: 610182) palmdelphin [Homo sapiens]     (551 aa)
 initn: 295 init1: 226 opt: 391  Z-score: 248.1  bits: 56.7 E(85289): 4.4e-07
Smith-Waterman score: 391; 28.2% identity (53.7% similar) in 404 aa overlap (1-385:1-387)

               10        20        30        40        50        60
pF1KSD MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIPAGTA
       : :::: : :::::..::: : ::  :: ...:. :  :: :.:.:::::::.:: .:  
NP_060 MEEAELVKGRLQAITDKRKIQEEISQKRLKIEEDKLKHQHLKKKALREKWLLDGISSG--
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KSD EEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQISAKEQIILEKLKETEKSFK
       .:.:  ..:...:. ... ::..: :::.::: ::. : :::.::. ::.:::  :.. .
NP_060 KEQEEMKKQNQQDQHQIQVLEQSILRLEKEIQDLEKAELQISTKEEAILKKLKSIERTTE
       60        70        80        90       100       110        

                  130       140         150          160       170 
pF1KSD DFQKGFS----STDGDAVNYISSQLPDLP--ILCSRTAEP---SPGQDGTSRAAGVGWEN
       :. .. .        .... : ...::::   . ::  .       .:  .: :  . : 
NP_060 DIIRSVKVEREERAEESIEDIYANIPDLPKSYIPSRLRKEINEEKEDDEQNRKALYAMEI
      120       130       140       150       160       170        

             180       190       200          210       220        
pF1KSD VLLKEGESASNATETSGPDMTIKKPPQLSEDDIW---LKSEGDNYSATLLEPAASSLSPD
        . :. ... ... .: :         :  ::.    .:   :. ...    .  : . .
NP_060 KVEKDLKTGESTVLSSIP---------LPSDDFKGTGIKVYDDGQKSVYAVSSNHSAAYN
      180       190                200       210       220         

      230       240       250       260       270         280      
pF1KSD HKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDN--DVAREIRY
         .    : : :     .  ..  : ..    :. :     : ..:..    .  ..:. 
NP_060 GTDGLAPVEVEELLRQASERNSKSPTEYHEPVYANPFYRPTTPQRETVTPGPNFQERIKI
     230       240       250       260       270       280         

        290       300       310       320          330       340   
pF1KSD LDEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGLSPPVHEAT---QPEPTERTASRQAP
         . :  .  .: . .  :: :  . .    .. . :  :  .   : :   .: ...  
NP_060 KTNGLGIGVNES-IHNMGNGLSEERGNNFNHISPIPPVPHPRSVIQQAEEKLHTPQKRLM
     290       300        310       320       330       340        

           350       360        370        380       390       400 
pF1KSD PHIELSNSSPDPMAEAERTNGHSPS-QPRDAL-GDSLQVPVSPSSTTSSRCSSRDGEFTL
          : ::   :  : . .     :  .::... : : .   ::.                
NP_060 TPWEESNVMQDKDAPSPK-----PRLSPRETIFGKSEHQNSSPTCQEDEEDVRYNIVHSL
      350       360            370       380       390       400   

             410       420       430       440       450       460 
pF1KSD TTLKKEAKFELRAFHEDKKPSKLFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQA
                                                                   
NP_060 PPDINDTEPVTMIFMGYQQAEDSEEDKKFLTGYDGIIHAELVVIDDEEEEDEGEAEKPSY
           410       420       430       440       450       460   

>>XP_005259623 (OMIM: 608134) PREDICTED: paralemmin-1 is  (386 aa)
 initn: 384 init1: 346 opt: 368  Z-score: 236.8  bits: 54.1 E(85289): 1.9e-06
Smith-Waterman score: 368; 32.6% identity (61.6% similar) in 258 aa overlap (2-250:5-255)

                  10        20        30        40        50       
pF1KSD    MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIPA
           ::.  ..:::::::::::::.:::.::.::...   ::: :::.:::.:::.: :.
XP_005 MVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTPS
               10        20        30        40        50        60

        60        70        80        90       100             110 
pF1KSD GTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----ILEK
       ...: .:  ::: ..:: ... :::...:::.::..::  .:   .:::.      .   
XP_005 SASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAP
               70        80        90       100       110       120

             120       130       140       150       160       170 
pF1KSD LKETEKSFKDFQKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWEN
            :  .  .  ..: .  . .  .... . :.   ::.. :: .    .::  . : 
XP_005 APSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMM----KAAMYSVEI
              130       140       150          160           170   

                180       190       200       210       220        
pF1KSD VLLKE---GESASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPD
       .. :.   ::.   .. :  : . .    .. ::.  .    :. . . ..: .::   .
XP_005 TVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDE
           180       190       200       210       220       230   

      230       240       250       260       270       280        
pF1KSD HKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLD
         .   ::...:  :. : . :                                      
XP_005 LIHKADEVTLSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQ
           240       250       260       270       280       290   

>>NP_002570 (OMIM: 608134) paralemmin-1 isoform 1 [Homo   (387 aa)
 initn: 384 init1: 346 opt: 368  Z-score: 236.8  bits: 54.1 E(85289): 1.9e-06
Smith-Waterman score: 368; 32.6% identity (61.6% similar) in 258 aa overlap (2-250:6-256)

                   10        20        30        40        50      
pF1KSD     MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIP
            ::.  ..:::::::::::::.:::.::.::...   ::: :::.:::.:::.: :
NP_002 MEVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTP
               10        20        30        40        50        60

         60        70        80        90       100             110
pF1KSD AGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----ILE
       ....: .:  ::: ..:: ... :::...:::.::..::  .:   .:::.      .  
NP_002 SSASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRA
               70        80        90       100       110       120

              120       130       140       150       160       170
pF1KSD KLKETEKSFKDFQKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWE
             :  .  .  ..: .  . .  .... . :.   ::.. :: .    .::  . :
NP_002 PAPSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMM----KAAMYSVE
              130       140       150          160           170   

                 180       190       200       210       220       
pF1KSD NVLLKE---GESASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSLSP
        .. :.   ::.   .. :  : . .    .. ::.  .    :. . . ..: .::   
NP_002 ITVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVD
           180       190       200       210       220       230   

       230       240       250       260       270       280       
pF1KSD DHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYL
       .  .   ::...:  :. : . :                                     
NP_002 ELIHKADEVTLSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPG
           240       250       260       270       280       290   

>>XP_005259622 (OMIM: 608134) PREDICTED: paralemmin-1 is  (389 aa)
 initn: 384 init1: 346 opt: 368  Z-score: 236.7  bits: 54.1 E(85289): 1.9e-06
Smith-Waterman score: 368; 32.6% identity (61.6% similar) in 258 aa overlap (2-250:8-258)

                     10        20        30        40        50    
pF1KSD       MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQG
              ::.  ..:::::::::::::.:::.::.::...   ::: :::.:::.:::.:
XP_005 MLPRVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEG
               10        20        30        40        50        60

           60        70        80        90       100              
pF1KSD IPAGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----I
        :....: .:  ::: ..:: ... :::...:::.::..::  .:   .:::.      .
XP_005 TPSSASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPV
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KSD LEKLKETEKSFKDFQKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVG
               :  .  .  ..: .  . .  .... . :.   ::.. :: .    .::  .
XP_005 RAPAPSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMM----KAAMYS
              130       140       150          160           170   

      170          180       190       200       210       220     
pF1KSD WENVLLKE---GESASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSL
        : .. :.   ::.   .. :  : . .    .. ::.  .    :. . . ..: .:: 
XP_005 VEITVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSE
           180       190       200       210       220       230   

         230       240       250       260       270       280     
pF1KSD SPDHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIR
         .  .   ::...:  :. : . :                                   
XP_005 VDELIHKADEVTLSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQ
           240       250       260       270       280       290   

>>NP_001035224 (OMIM: 608134) paralemmin-1 isoform 2 [Ho  (343 aa)
 initn: 384 init1: 346 opt: 351  Z-score: 227.5  bits: 52.2 E(85289): 6.2e-06
Smith-Waterman score: 374; 29.2% identity (59.4% similar) in 367 aa overlap (2-356:6-330)

                   10        20        30        40        50      
pF1KSD     MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIP
            ::.  ..:::::::::::::.:::.::.::...   ::: :::.:::.:::.: :
NP_001 MEVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTP
               10        20        30        40        50        60

         60        70        80        90       100             110
pF1KSD AGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----ILE
       ....: .:  ::: ..:: ... :::...:::.::..::  .:   .:::.      .  
NP_001 SSASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRA
               70        80        90       100       110       120

              120       130       140       150       160       170
pF1KSD KLKETEKSFKDFQKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWE
             :  .  .  ..: .  . .  .... . :.   ::.. :: . .. .:.    :
NP_001 PAPSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMMKAVVHAVDGTAE
              130       140       150          160       170       

              180       190       200       210       220          
pF1KSD NVLLKEGESASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPA---ASSLSP
       :     :    ...:.   :  :.:      :.. :.  :.. .:.  . :   :.  .:
NP_001 N-----GIHPLSSSEV---DELIHK-----ADEVTLSEAGSTAGAAETRGAVEGAARTTP
            180          190            200       210       220    

       230       240       250       260       270       280       
pF1KSD DHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYL
       ...    :.. .. .  :: ...  :  .:.    :: . ..  ...  :.  ....  :
NP_001 SRR----EITGVQAQ--PGEATSGPPGIQPGQ--EPPVTMIFMGYQNVEDEAETKKVLGL
              230         240       250         260       270      

       290       300       310       320       330       340       
pF1KSD DEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASR---QAPP
       .... :.    ...   ...   ::         .::   :..: ::: .:::   :: :
NP_001 QDTITAELV--VIE---DAAEPKEP---------APPNGSAAEP-PTE-AASREENQAGP
        280            290                300         310       320

          350       360       370       380       390       400    
pF1KSD HIELSNSSPDPMAEAERTNGHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTL
         : ..:.:. .                                                
NP_001 --EATTSDPQDLDMKKHRCKCCSIM                                   
                330       340                                      

>>XP_016882339 (OMIM: 608134) PREDICTED: paralemmin-1 is  (345 aa)
 initn: 384 init1: 346 opt: 351  Z-score: 227.4  bits: 52.2 E(85289): 6.3e-06
Smith-Waterman score: 374; 29.2% identity (59.4% similar) in 367 aa overlap (2-356:8-332)

                     10        20        30        40        50    
pF1KSD       MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQG
              ::.  ..:::::::::::::.:::.::.::...   ::: :::.:::.:::.:
XP_016 MLPRVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEG
               10        20        30        40        50        60

           60        70        80        90       100              
pF1KSD IPAGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----I
        :....: .:  ::: ..:: ... :::...:::.::..::  .:   .:::.      .
XP_016 TPSSASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPV
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KSD LEKLKETEKSFKDFQKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVG
               :  .  .  ..: .  . .  .... . :.   ::.. :: . .. .:.   
XP_016 RAPAPSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMMKAVVHAVDGT
              130       140       150          160       170       

      170       180       190       200       210       220        
pF1KSD WENVLLKEGESASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPA---ASSL
        ::     :    ...:.   :  :.:      :.. :.  :.. .:.  . :   :.  
XP_016 AEN-----GIHPLSSSEV---DELIHK-----ADEVTLSEAGSTAGAAETRGAVEGAART
       180            190               200       210       220    

         230       240       250       260       270       280     
pF1KSD SPDHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIR
       .:...    :.. .. .  :: ...  :  .:.    :: . ..  ...  :.  .... 
XP_016 TPSRR----EITGVQAQ--PGEATSGPPGIQPGQ--EPPVTMIFMGYQNVEDEAETKKVL
              230         240       250         260       270      

         290       300       310       320       330       340     
pF1KSD YLDEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASR---QA
        :.... :.    ...   ...   ::         .::   :..: ::: .:::   ::
XP_016 GLQDTITAELV--VIE---DAAEPKEP---------APPNGSAAEP-PTE-AASREENQA
        280         290                   300        310        320

            350       360       370       380       390       400  
pF1KSD PPHIELSNSSPDPMAEAERTNGHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLT
        :  : ..:.:. .                                              
XP_016 GP--EATTSDPQDLDMKKHRCKCCSIM                                 
                330       340                                      




1103 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:12:14 2016 done: Thu Nov  3 04:12:16 2016
 Total Scan time: 14.250 Total Display time:  0.120

Function used was FASTA [36.3.4 Apr, 2011]
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