FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0923, 614 aa
  1>>>pF1KSDA0923 614 - 614 aa - 614 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3219+/-0.00124; mu= 0.8005+/- 0.074
 mean_var=228.0568+/-45.660, 0's: 0 Z-trim(107.7): 53  B-trim: 11 in 1/51
 Lambda= 0.084928
 statistics sampled from 9679 (9710) to 9679 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.298), width:  16
 Scan time:  3.740

The best scores are:                                      opt bits E(32554)
CCDS699.1 SSX2IP gene_id:117178|Hs108|chr1         ( 614) 4028 507.2 2.5e-143
CCDS53337.1 SSX2IP gene_id:117178|Hs108|chr1       ( 587) 3853 485.7  7e-137


>>CCDS699.1 SSX2IP gene_id:117178|Hs108|chr1              (614 aa)
 initn: 4028 init1: 4028 opt: 4028  Z-score: 2686.5  bits: 507.2 E(32554): 2.5e-143
Smith-Waterman score: 4028; 100.0% identity (100.0% similar) in 614 aa overlap (1-614:1-614)

               10        20        30        40        50        60
pF1KSD MGDWMTVTDPGLSSESKTISQYTSETKMSPSSLYSQQVLCSSIPLSKNVHSFFSAFCTED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MGDWMTVTDPGLSSESKTISQYTSETKMSPSSLYSQQVLCSSIPLSKNVHSFFSAFCTED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NIEQSISYLDQELTTFGFPSLYEESKGKETKRELNIVAVLNCMNELLVLQRKNLLAQENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 NIEQSISYLDQELTTFGFPSLYEESKGKETKRELNIVAVLNCMNELLVLQRKNLLAQENV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ETQNLKLGSDMDHLQSCYSKLKEQLETSRREMIGLQERDRQLQCKNRNLHQLLKNEKDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ETQNLKLGSDMDHLQSCYSKLKEQLETSRREMIGLQERDRQLQCKNRNLHQLLKNEKDEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDKKIAMDILNYVGRADGKRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDKKIAMDILNYVGRADGKRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKEMISLLSPQKKKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKEMISLLSPQKKKPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ERVDDSTGTVISDVEEDAGELSRESMWDLSCETVREQLTNSIRKQWRILKSHVEKLDNQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ERVDDSTGTVISDVEEDAGELSRESMWDLSCETVREQLTNSIRKQWRILKSHVEKLDNQV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATAYDDDTTSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATAYDDDTTSLL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RDCYLLEEKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGLERKAFEEERASWLKQQFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RDCYLLEEKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGLERKAFEEERASWLKQQFL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NMTTFDHQNSENVKLFSAFSGSSDWDNLIVHSRQPQKKPHSVSNGSPVCMSKLTKSLPAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 NMTTFDHQNSENVKLFSAFSGSSDWDNLIVHSRQPQKKPHSVSNGSPVCMSKLTKSLPAS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD PSTSDFCQTRSCISEHSSINVLNITAEEIKPNQVGGECTNQKWSVASRPGSQEGCYSGCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PSTSDFCQTRSCISEHSSINVLNITAEEIKPNQVGGECTNQKWSVASRPGSQEGCYSGCS
              550       560       570       580       590       600

              610    
pF1KSD LSYTNSHVEKDDLP
       ::::::::::::::
CCDS69 LSYTNSHVEKDDLP
              610    

>>CCDS53337.1 SSX2IP gene_id:117178|Hs108|chr1            (587 aa)
 initn: 3853 init1: 3853 opt: 3853  Z-score: 2570.9  bits: 485.7 E(32554): 7e-137
Smith-Waterman score: 3853; 100.0% identity (100.0% similar) in 587 aa overlap (28-614:1-587)

               10        20        30        40        50        60
pF1KSD MGDWMTVTDPGLSSESKTISQYTSETKMSPSSLYSQQVLCSSIPLSKNVHSFFSAFCTED
                                  :::::::::::::::::::::::::::::::::
CCDS53                            MSPSSLYSQQVLCSSIPLSKNVHSFFSAFCTED
                                          10        20        30   

               70        80        90       100       110       120
pF1KSD NIEQSISYLDQELTTFGFPSLYEESKGKETKRELNIVAVLNCMNELLVLQRKNLLAQENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NIEQSISYLDQELTTFGFPSLYEESKGKETKRELNIVAVLNCMNELLVLQRKNLLAQENV
            40        50        60        70        80        90   

              130       140       150       160       170       180
pF1KSD ETQNLKLGSDMDHLQSCYSKLKEQLETSRREMIGLQERDRQLQCKNRNLHQLLKNEKDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ETQNLKLGSDMDHLQSCYSKLKEQLETSRREMIGLQERDRQLQCKNRNLHQLLKNEKDEV
           100       110       120       130       140       150   

              190       200       210       220       230       240
pF1KSD QKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDKKIAMDILNYVGRADGKRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDKKIAMDILNYVGRADGKRG
           160       170       180       190       200       210   

              250       260       270       280       290       300
pF1KSD SWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKEMISLLSPQKKKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKEMISLLSPQKKKPR
           220       230       240       250       260       270   

              310       320       330       340       350       360
pF1KSD ERVDDSTGTVISDVEEDAGELSRESMWDLSCETVREQLTNSIRKQWRILKSHVEKLDNQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ERVDDSTGTVISDVEEDAGELSRESMWDLSCETVREQLTNSIRKQWRILKSHVEKLDNQV
           280       290       300       310       320       330   

              370       380       390       400       410       420
pF1KSD SKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATAYDDDTTSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATAYDDDTTSLL
           340       350       360       370       380       390   

              430       440       450       460       470       480
pF1KSD RDCYLLEEKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGLERKAFEEERASWLKQQFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RDCYLLEEKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGLERKAFEEERASWLKQQFL
           400       410       420       430       440       450   

              490       500       510       520       530       540
pF1KSD NMTTFDHQNSENVKLFSAFSGSSDWDNLIVHSRQPQKKPHSVSNGSPVCMSKLTKSLPAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NMTTFDHQNSENVKLFSAFSGSSDWDNLIVHSRQPQKKPHSVSNGSPVCMSKLTKSLPAS
           460       470       480       490       500       510   

              550       560       570       580       590       600
pF1KSD PSTSDFCQTRSCISEHSSINVLNITAEEIKPNQVGGECTNQKWSVASRPGSQEGCYSGCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PSTSDFCQTRSCISEHSSINVLNITAEEIKPNQVGGECTNQKWSVASRPGSQEGCYSGCS
           520       530       540       550       560       570   

              610    
pF1KSD LSYTNSHVEKDDLP
       ::::::::::::::
CCDS53 LSYTNSHVEKDDLP
           580       




614 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:14:01 2016 done: Thu Nov  3 04:14:02 2016
 Total Scan time:  3.740 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]