Result of FASTA (omim) for
pF1KSDA0940
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0940, 684 aa
1>>>pF1KSDA0940 684 - 684 aa - 684 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.4478+/-0.00048; mu= -20.3285+/- 0.030
mean_var=630.8030+/-132.386, 0's: 0 Z-trim(124.5): 43 B-trim: 384 in 1/56
Lambda= 0.051065
statistics sampled from 46383 (46432) to 46383 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.544), width: 16
Scan time: 14.380
The best scores are: opt bits E(85289)
NP_001171608 (OMIM: 610606) cytoplasmic polyadenyl ( 684) 4791 368.1 6.4e-101
XP_005269687 (OMIM: 610606) PREDICTED: cytoplasmic ( 684) 4791 368.1 6.4e-101
XP_011537817 (OMIM: 610606) PREDICTED: cytoplasmic ( 692) 4762 365.9 2.8e-100
XP_011537825 (OMIM: 610606) PREDICTED: cytoplasmic ( 395) 2692 213.2 1.5e-54
XP_011537822 (OMIM: 610606) PREDICTED: cytoplasmic ( 598) 2693 213.4 1.9e-54
NP_001170855 (OMIM: 610605) cytoplasmic polyadenyl ( 999) 2644 210.0 3.5e-53
NP_872587 (OMIM: 610605) cytoplasmic polyadenylati ( 996) 2642 209.9 3.8e-53
XP_011537824 (OMIM: 610606) PREDICTED: cytoplasmic ( 418) 2556 203.2 1.6e-51
XP_011537821 (OMIM: 610606) PREDICTED: cytoplasmic ( 621) 2556 203.4 2.2e-51
XP_011537820 (OMIM: 610606) PREDICTED: cytoplasmic ( 640) 2556 203.4 2.2e-51
NP_055727 (OMIM: 610606) cytoplasmic polyadenylati ( 698) 2556 203.4 2.4e-51
XP_011537816 (OMIM: 610606) PREDICTED: cytoplasmic ( 707) 2556 203.4 2.4e-51
XP_011537819 (OMIM: 610606) PREDICTED: cytoplasmic ( 665) 2555 203.3 2.4e-51
XP_006717778 (OMIM: 610606) PREDICTED: cytoplasmic ( 715) 2556 203.4 2.4e-51
XP_006717777 (OMIM: 610606) PREDICTED: cytoplasmic ( 715) 2556 203.4 2.4e-51
NP_001170854 (OMIM: 610605) cytoplasmic polyadenyl (1004) 2443 195.2 1e-48
NP_872291 (OMIM: 610605) cytoplasmic polyadenylati (1026) 2357 188.9 8.2e-47
XP_005266051 (OMIM: 610607) PREDICTED: cytoplasmic ( 721) 2325 186.4 3.2e-46
XP_011512079 (OMIM: 610605) PREDICTED: cytoplasmic (1029) 2330 186.9 3.3e-46
NP_001170852 (OMIM: 610605) cytoplasmic polyadenyl (1007) 2320 186.2 5.4e-46
NP_085130 (OMIM: 610607) cytoplasmic polyadenylati ( 729) 2309 185.2 7.4e-46
NP_001170853 (OMIM: 610605) cytoplasmic polyadenyl (1034) 2180 175.9 7e-43
XP_005248192 (OMIM: 610605) PREDICTED: cytoplasmic (1037) 2141 173.0 5.1e-42
XP_016871416 (OMIM: 610606) PREDICTED: cytoplasmic ( 314) 2109 170.2 1.1e-41
NP_001295121 (OMIM: 610607) cytoplasmic polyadenyl ( 339) 2093 169.0 2.6e-41
XP_016863223 (OMIM: 610605) PREDICTED: cytoplasmic ( 463) 2066 167.2 1.3e-40
XP_016863222 (OMIM: 610605) PREDICTED: cytoplasmic ( 463) 2066 167.2 1.3e-40
NP_001295122 (OMIM: 610607) cytoplasmic polyadenyl ( 322) 1970 159.9 1.3e-38
NP_001295118 (OMIM: 610607) cytoplasmic polyadenyl ( 712) 1981 161.1 1.4e-38
NP_001295120 (OMIM: 610607) cytoplasmic polyadenyl ( 704) 1979 160.9 1.5e-38
NP_001275749 (OMIM: 607342) cytoplasmic polyadenyl ( 335) 744 69.6 2.1e-11
NP_001275748 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 744 69.8 2.8e-11
NP_001073002 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 744 69.8 2.8e-11
NP_001073003 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 744 69.8 2.8e-11
NP_085097 (OMIM: 607342) cytoplasmic polyadenylati ( 561) 744 69.8 3.1e-11
NP_001073001 (OMIM: 607342) cytoplasmic polyadenyl ( 491) 609 59.8 2.8e-08
XP_011512081 (OMIM: 610605) PREDICTED: cytoplasmic ( 666) 472 49.9 3.8e-05
>>NP_001171608 (OMIM: 610606) cytoplasmic polyadenylatio (684 aa)
initn: 4791 init1: 4791 opt: 4791 Z-score: 1932.8 bits: 368.1 E(85289): 6.4e-101
Smith-Waterman score: 4791; 100.0% identity (100.0% similar) in 684 aa overlap (1-684:1-684)
10 20 30 40 50 60
pF1KSD MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD HEPLKGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRCQNGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HEPLKGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRCQNGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD RVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD GVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRA
610 620 630 640 650 660
670 680
pF1KSD GREFHKPLVKEGGDRPRHVPFRWS
::::::::::::::::::::::::
NP_001 GREFHKPLVKEGGDRPRHVPFRWS
670 680
>>XP_005269687 (OMIM: 610606) PREDICTED: cytoplasmic pol (684 aa)
initn: 4791 init1: 4791 opt: 4791 Z-score: 1932.8 bits: 368.1 E(85289): 6.4e-101
Smith-Waterman score: 4791; 100.0% identity (100.0% similar) in 684 aa overlap (1-684:1-684)
10 20 30 40 50 60
pF1KSD MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD HEPLKGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRCQNGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HEPLKGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRCQNGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD RVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD GVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRA
610 620 630 640 650 660
670 680
pF1KSD GREFHKPLVKEGGDRPRHVPFRWS
::::::::::::::::::::::::
XP_005 GREFHKPLVKEGGDRPRHVPFRWS
670 680
>>XP_011537817 (OMIM: 610606) PREDICTED: cytoplasmic pol (692 aa)
initn: 2691 init1: 2691 opt: 4762 Z-score: 1921.2 bits: 365.9 E(85289): 2.8e-100
Smith-Waterman score: 4762; 98.7% identity (98.8% similar) in 692 aa overlap (1-684:1-692)
10 20 30 40 50 60
pF1KSD MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
310 320 330 340 350 360
370 380 390 400 410
pF1KSD HEPLKGRMGINFHHPGTDNIMALNSRS--------SLFPFEDAFLDDSHGDQALSSGLSS
::::::::::::::::::::::::.:: :::::::::::::::::::::::::
XP_011 HEPLKGRMGINFHHPGTDNIMALNTRSYGRRRGRSSLFPFEDAFLDDSHGDQALSSGLSS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD PTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGY
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD AFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLD
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD PRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIA
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD AISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYC
610 620 630 640 650 660
660 670 680
pF1KSD WASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
::::::::::::::::::::::::::::::::
XP_011 WASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
670 680 690
>>XP_011537825 (OMIM: 610606) PREDICTED: cytoplasmic pol (395 aa)
initn: 3033 init1: 2692 opt: 2692 Z-score: 1100.3 bits: 213.2 E(85289): 1.5e-54
Smith-Waterman score: 2692; 99.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390)
10 20 30 40 50 60
pF1KSD MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD HEPLKGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRCQNGE
::::::::::::::::::::::::...::.
XP_011 HEPLKGRMGINFHHPGTDNIMALNKQQSLYDSTSV
370 380 390
>>XP_011537822 (OMIM: 610606) PREDICTED: cytoplasmic pol (598 aa)
initn: 2686 init1: 2686 opt: 2693 Z-score: 1098.3 bits: 213.4 E(85289): 1.9e-54
Smith-Waterman score: 4009; 87.4% identity (87.4% similar) in 684 aa overlap (1-684:1-598)
10 20 30 40 50 60
pF1KSD MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD HEPLKGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRCQNGE
:::::::::::::::::::::::::
XP_011 HEPLKGRMGINFHHPGTDNIMALNS-----------------------------------
370 380
430 440 450 460 470 480
pF1KSD RVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEE
:::::::::
XP_011 ---------------------------------------------------YAFLLFQEE
390
490 500 510 520 530 540
pF1KSD SSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVG
400 410 420 430 440 450
550 560 570 580 590 600
pF1KSD GVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQ
460 470 480 490 500 510
610 620 630 640 650 660
pF1KSD LQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRA
520 530 540 550 560 570
670 680
pF1KSD GREFHKPLVKEGGDRPRHVPFRWS
::::::::::::::::::::::::
XP_011 GREFHKPLVKEGGDRPRHVPFRWS
580 590
>>NP_001170855 (OMIM: 610605) cytoplasmic polyadenylatio (999 aa)
initn: 2508 init1: 1835 opt: 2644 Z-score: 1075.8 bits: 210.0 E(85289): 3.5e-53
Smith-Waterman score: 2700; 62.8% identity (77.3% similar) in 678 aa overlap (42-684:370-999)
20 30 40 50 60 70
pF1KSD TQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVP-ALSPAAAPPAPNGPDK
: .: : . ..: ... :. :: :. :
NP_001 SSLQSPDLPHPGGGGGGGGGGPPGGGGGGGSASPPPLPGFGTPWSVQTASPPPQPQQPPP
340 350 360 370 380 390
80 90 100 110 120
pF1KSD MQ-MESPLLPGLSFHQPPQQPPPPQEPAAPGAS-LSPSFGSTWSTGT----TNAVEDSFF
: ...: : :::::: :: : ::.: .:. :: : .. . :..:.
NP_001 TQPQQQP--P------PPQQPPQPQ-PQPPGSSATTPGGGSGGSLSAMPPPSPDSENGFY
400 410 420 430 440 450
130 140 150 160 170
pF1KSD QGITPVNGTMLFQNF----PHHVN----PVFGGTFSPQIGLAQTQHHQQPPPPA---PAP
:. . .: .: :: . :. :: . : .. ::::: :
NP_001 PGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPPPAMNIPQQ
460 470 480 490 500 510
180 190 200 210 220
pF1KSD QPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAY--------GHQPIMTSKPSSSSA
:: :: : : ::.::::.:: : ...::::. :::.. ..:
NP_001 QPPPPAAPQQ---PQSRRSPVSP-QLQQQHQAAAAAFLQQRNSYNHHQPLLKQSP-----
520 530 540 550 560
230 240 250 260 270 280
pF1KSD VAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSP
:..::: ..:.. : ::... ::: ::. : ..:.:.
NP_001 ----------------WSNHQS--SGWGTGSMSWGAMH-GRDHRRT-----G-NMGIPGT
570 580 590
290 300 310 320 330 340
pF1KSD LNPISPLKKPFSSNVIAPPKFPRAAP-LTSKSWMEDNAFRTDNGNN-LLPFQ---DRSRP
.: :::::::::.:::::::: :..: :: :::.:::.:::::..: :::.: ::::
NP_001 MNQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQVRMDRSRM
600 610 620 630 640 650
350 360 370 380 390 400
pF1KSD YDTFNLHSLENSLMDMIRTDHEPLKGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDS
::..:.:::::::.:..:..:.:::::. .. ::::::.. ::.::::::..:..:::.
NP_001 YDSLNMHSLENSLIDIMRAEHDPLKGRL--SYPHPGTDNLLMLNGRSSLFPIDDGLLDDG
660 670 680 690 700 710
410 420 430 440 450
pF1KSD HGDQALSSGLSSPTRC----QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVD
:.::. . :.::: : :::::.::.:::::::::::::::::::::::::::::::
NP_001 HSDQV--GVLNSPT-CYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVD
720 730 740 750 760 770
460 470 480 490 500 510
pF1KSD WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPW
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPW
780 790 800 810 820 830
520 530 540 550 560 570
pF1KSD NLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYP
840 850 860 870 880 890
580 590 600 610 620 630
pF1KSD KGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAP
:::::::::::::::::::::::::::.:::::::::::::::::::::::.::::::::
NP_001 KGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFAP
900 910 920 930 940 950
640 650 660 670 680
pF1KSD FFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
::::::::::::::.:::.:::::::::::::::::.::::.. :::.
NP_001 FFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADRPRQIHFRWN
960 970 980 990
>>NP_872587 (OMIM: 610605) cytoplasmic polyadenylation e (996 aa)
initn: 2383 init1: 1845 opt: 2642 Z-score: 1075.0 bits: 209.9 E(85289): 3.8e-53
Smith-Waterman score: 2716; 63.1% identity (77.6% similar) in 675 aa overlap (42-684:370-996)
20 30 40 50 60 70
pF1KSD TQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVP-ALSPAAAPPAPNGPDK
: .: : . ..: ... :. :: :. :
NP_872 SSLQSPDLPHPGGGGGGGGGGPPGGGGGGGSASPPPLPGFGTPWSVQTASPPPQPQQPPP
340 350 360 370 380 390
80 90 100 110 120
pF1KSD MQ-MESPLLPGLSFHQPPQQPPPPQEPAAPGAS-LSPSFGSTWSTGT----TNAVEDSFF
: ...: : :::::: :: : ::.: .:. :: : .. . :..:.
NP_872 TQPQQQP--P------PPQQPPQPQ-PQPPGSSATTPGGGSGGSLSAMPPPSPDSENGFY
400 410 420 430 440 450
130 140 150 160 170
pF1KSD QGITPVNGTMLFQNF----PHHVN----PVFGGTFSPQIGLAQTQHHQQPPPPA---PAP
:. . .: .: :: . :. :: . : .. ::::: :
NP_872 PGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPPPAMNIPQQ
460 470 480 490 500 510
180 190 200 210 220
pF1KSD QPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAY--------GHQPIMTSKPSSSSA
:: :: : : ::.::::.:: : ...::::. :::.. ..:
NP_872 QPPPPAAPQQ---PQSRRSPVSP-QLQQQHQAAAAAFLQQRNSYNHHQPLLKQSP-----
520 530 540 550 560
230 240 250 260 270 280
pF1KSD VAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSP
:..::: ..:.. : ::... ::: ::. : ..:.:.
NP_872 ----------------WSNHQS--SGWGTGSMSWGAMH-GRDHRRT-----G-NMGIPGT
570 580 590
290 300 310 320 330 340
pF1KSD LNPISPLKKPFSSNVIAPPKFPRAAP-LTSKSWMEDNAFRTDNGNN-LLPFQDRSRPYDT
.: :::::::::.:::::::: :..: :: :::.:::.:::::..: :::.::::: ::.
NP_872 MNQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQDRSRMYDS
600 610 620 630 640 650
350 360 370 380 390 400
pF1KSD FNLHSLENSLMDMIRTDHEPLKGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGD
.:.:::::::.:..:..:.:::::. .. ::::::.. ::.::::::..:..:::.:.:
NP_872 LNMHSLENSLIDIMRAEHDPLKGRL--SYPHPGTDNLLMLNGRSSLFPIDDGLLDDGHSD
660 670 680 690 700 710
410 420 430 440 450
pF1KSD QALSSGLSSPTRC----QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPH
:. . :.::: : :::::.::.::::::::::::::::::::::::::::::::::
NP_872 QV--GVLNSPT-CYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPH
720 730 740 750 760 770
460 470 480 490 500 510
pF1KSD KAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLS
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
NP_872 KAESKSYFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLS
780 790 800 810 820 830
520 530 540 550 560 570
pF1KSD DSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 DSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGA
840 850 860 870 880 890
580 590 600 610 620 630
pF1KSD GRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFC
::::::::::::::::::::::::.:::::::::::::::::::::::.:::::::::::
NP_872 GRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFAPFFC
900 910 920 930 940 950
640 650 660 670 680
pF1KSD ANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
:::::::::::.:::.:::::::::::::::::.::::.. :::.
NP_872 ANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADRPRQIHFRWN
960 970 980 990
>>XP_011537824 (OMIM: 610606) PREDICTED: cytoplasmic pol (418 aa)
initn: 2689 init1: 2551 opt: 2556 Z-score: 1045.8 bits: 203.2 E(85289): 1.6e-51
Smith-Waterman score: 2636; 93.5% identity (94.4% similar) in 413 aa overlap (1-390:1-413)
10 20 30 40 50 60
pF1KSD MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
310 320 330 340 350 360
370 380 390
pF1KSD HEPLKG-----------------------RMGINFHHPGTDNIMALNSRSSLFPFEDAFL
:::::: ::::::::::::::::::...::.
XP_011 HEPLKGKHYPPSGPPMSFADIMWRNHFAGRMGINFHHPGTDNIMALNKQQSLYDSTSV
370 380 390 400 410
400 410 420 430 440 450
pF1KSD DDSHGDQALSSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDW
>>XP_011537821 (OMIM: 610606) PREDICTED: cytoplasmic pol (621 aa)
initn: 4046 init1: 2551 opt: 2556 Z-score: 1043.5 bits: 203.4 E(85289): 2.2e-51
Smith-Waterman score: 3954; 86.3% identity (88.7% similar) in 684 aa overlap (1-684:1-621)
10 20 30 40 50 60
pF1KSD MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD HEPLKGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRCQNGE
::::::. :.: . :. : : .
XP_011 HEPLKGK-----HYPPSGPPMS---------FADIMW-----------------------
370 380
430 440 450 460 470 480
pF1KSD RVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEE
:. :.: :.: ... : . . . . ..:::::::::
XP_011 ------RNHFAG----------------RMG---INFHHPG-TDNIMALNSYAFLLFQEE
390 400 410
490 500 510 520 530 540
pF1KSD SSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVG
420 430 440 450 460 470
550 560 570 580 590 600
pF1KSD GVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQ
480 490 500 510 520 530
610 620 630 640 650 660
pF1KSD LQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRA
540 550 560 570 580 590
670 680
pF1KSD GREFHKPLVKEGGDRPRHVPFRWS
::::::::::::::::::::::::
XP_011 GREFHKPLVKEGGDRPRHVPFRWS
600 610 620
>>XP_011537820 (OMIM: 610606) PREDICTED: cytoplasmic pol (640 aa)
initn: 4067 init1: 2551 opt: 2556 Z-score: 1043.4 bits: 203.4 E(85289): 2.2e-51
Smith-Waterman score: 4127; 95.0% identity (95.2% similar) in 640 aa overlap (1-609:1-640)
10 20 30 40 50 60
pF1KSD MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
310 320 330 340 350 360
370 380
pF1KSD HEPLKG-----------------------RMGINFHHPGTDNIMALNSRS--------SL
:::::: ::::::::::::::::::.:: ::
XP_011 HEPLKGKHYPPSGPPMSFADIMWRNHFAGRMGINFHHPGTDNIMALNTRSYGRRRGRSSL
370 380 390 400 410 420
390 400 410 420 430 440
pF1KSD FPFEDAFLDDSHGDQALSSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FPFEDAFLDDSHGDQALSSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRR
430 440 450 460 470 480
450 460 470 480 490 500
pF1KSD FGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDK
490 500 510 520 530 540
510 520 530 540 550 560
pF1KSD PVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDT
550 560 570 580 590 600
570 580 590 600 610 620
pF1KSD DPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTR
::::::::::::::::::::::::::::::::::::::::
XP_011 DPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKR
610 620 630 640
630 640 650 660 670 680
pF1KSD CGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
684 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:19:47 2016 done: Thu Nov 3 04:19:49 2016
Total Scan time: 14.380 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]