Result of FASTA (ccds) for
pF1KSDA0945
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0945, 779 aa
1>>>pF1KSDA0945 779 - 779 aa - 779 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2104+/-0.000913; mu= 6.2827+/- 0.055
mean_var=315.6153+/-63.386, 0's: 0 Z-trim(116.4): 40 B-trim: 152 in 1/54
Lambda= 0.072193
statistics sampled from 17016 (17052) to 17016 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.524), width: 16
Scan time: 5.370
The best scores are: opt bits E(32554)
CCDS73705.1 BAHD1 gene_id:22893|Hs108|chr15 ( 779) 5520 588.9 1.1e-167
CCDS10058.1 BAHD1 gene_id:22893|Hs108|chr15 ( 780) 5508 587.6 2.6e-167
>>CCDS73705.1 BAHD1 gene_id:22893|Hs108|chr15 (779 aa)
initn: 5520 init1: 5520 opt: 5520 Z-score: 3124.1 bits: 588.9 E(32554): 1.1e-167
Smith-Waterman score: 5520; 99.9% identity (100.0% similar) in 779 aa overlap (1-779:1-779)
10 20 30 40 50 60
pF1KSD MTHTRRKSLPMLSSGLTGRREPLQMEDSNMEQGVEGVEPGMPESPGHLTGRRKNYPLRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MTHTRRKSLPMLSSGLTGRREPLQMEDSNMEQGVEGVEPGMPESPGHLTGRRKNYPLRKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PLVPEKPKACKVLLTRLENVAGPRSADEADELPPDLPKPPSPAPSSEDPGLAQPRKRRLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PLVPEKPKACKVLLTRLENVAGPRSADEADELPPDLPKPPSPAPSSEDPGLAQPRKRRLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD SLNAEALNNLLLEREDTSSLAGTRRSRAGDPHRSRDRDRATGGWSSSKKRPRLGDLGGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SLNAEALNNLLLEREDTSSLAGTRRSRAGDPHRSRDRDRATGGWSSSKKRPRLGDLGGGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD RDLSPEPAPDEGPRRDGDPAPKRLASLNAAAFLKLSQERELPLRLPRAHAEVDGRSTEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RDLSPEPAPDEGPRRDGDPAPKRLASLNAAAFLKLSQERELPLRLPRAHAEVDGRSTEPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD APKAPRPKWPKVNGKNYPKAWQGASSGEAAGPPGWQGCPDEPWPSATPCGPSVQPSHKPL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS73 APKAPRPKWPKVNGKNYPKAWQGASSGEAAGPPGWQGCPDEPWPSATPCGPSVQPSHQPL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SKALESPLGLRPHLPLLMGGQAALKPEPGRPGEESPAPKQELHQPSFPTPQLSPLPMPGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SKALESPLGLRPHLPLLMGGQAALKPEPGRPGEESPAPKQELHQPSFPTPQLSPLPMPGN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PADYNGLCVGPELTALGSFYLYCGQEGLQCGGYSPCPMLPEGKLSPVAAPHEEGLLLAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PADYNGLCVGPELTALGSFYLYCGQEGLQCGGYSPCPMLPEGKLSPVAAPHEEGLLLAPS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SVPSGTPFQHPPWGSSRYCSSEDTGVNGYSICGVLPLSVTHAGTTCGGCPYKMPFAAGCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SVPSGTPFQHPPWGSSRYCSSEDTGVNGYSICGVLPLSVTHAGTTCGGCPYKMPFAAGCR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SLGQLEFPLPEAGHPASPAHPLLGCPVPSVPPAAEPVPHLQTPTSEPQTVARACPQSAKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SLGQLEFPLPEAGHPASPAHPLLGCPVPSVPPAAEPVPHLQTPTSEPQTVARACPQSAKP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD PSGSKSGLRTGSSCRHTARSKAARRPSHPKQPRVQRPRPRRRRRRRTNGWVPVGAACEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSGSKSGLRTGSSCRHTARSKAARRPSHPKQPRVQRPRPRRRRRRRTNGWVPVGAACEKA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD VYVLDEPEPAIRKSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VYVLDEPEPAIRKSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGEL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD MMSLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MMSLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCA
670 680 690 700 710 720
730 740 750 760 770
pF1KSD MAKRRGEGLPSRKTALVPPSADYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAKRRGEGLPSRKTALVPPSADYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNPQ
730 740 750 760 770
>>CCDS10058.1 BAHD1 gene_id:22893|Hs108|chr15 (780 aa)
initn: 3433 init1: 3391 opt: 5508 Z-score: 3117.4 bits: 587.6 E(32554): 2.6e-167
Smith-Waterman score: 5508; 99.7% identity (99.9% similar) in 780 aa overlap (1-779:1-780)
10 20 30 40 50 60
pF1KSD MTHTRRKSLPMLSSGLTGRREPLQMEDSNMEQGVEGVEPGMPESPGHLTGRRKNYPLRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MTHTRRKSLPMLSSGLTGRREPLQMEDSNMEQGVEGVEPGMPESPGHLTGRRKNYPLRKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PLVPEKPKACKVLLTRLENVAGPRSADEADELPPDLPKPPSPAPSSEDPGLAQPRKRRLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PLVPEKPKACKVLLTRLENVAGPRSADEADELPPDLPKPPSPAPSSEDPGLAQPRKRRLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD SLNAEALNNLLLEREDTSSLAGTRRSRAGDPHRSRDRDRATGGWSSSKKRPRLGDLGGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLNAEALNNLLLEREDTSSLAGTRRSRAGDPHRSRDRDRATGGWSSSKKRPRLGDLGGGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD RDLSPEPAPDEGPRRDGDPAPKRLASLNAAAFLKLSQERELPLRLPRAHAEVDGRSTEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RDLSPEPAPDEGPRRDGDPAPKRLASLNAAAFLKLSQERELPLRLPRAHAEVDGRSTEPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD APKAPRPKWPKVNGKNYPKAWQGASSGEAAGPPGWQGCPDEPWPSATPCGPSVQPSHKPL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS10 APKAPRPKWPKVNGKNYPKAWQGASSGEAAGPPGWQGCPDEPWPSATPCGPSVQPSHQPL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SKALESPLGLRPHLPLLMGGQAALKPEPGRPGEESPAPKQELHQPSFPTPQLSPLPMPGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SKALESPLGLRPHLPLLMGGQAALKPEPGRPGEESPAPKQELHQPSFPTPQLSPLPMPGN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PADYNGLCVGPELTALGSFYLYCGQEGLQCGGYSPCPMLPEGKLSPVAAPHEEGLLLAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PADYNGLCVGPELTALGSFYLYCGQEGLQCGGYSPCPMLPEGKLSPVAAPHEEGLLLAPS
370 380 390 400 410 420
430 440 450 460 470
pF1KSD SVPSGTPFQHPPWGSSRYCSSEDTGVNGYSICGVLPLSVTHAGTTCGGCPYKMPFAA-GC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS10 SVPSGTPFQHPPWGSSRYCSSEDTGVNGYSICGVLPLSVTHAGTTCGGCPYKMPFAAEGC
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD RSLGQLEFPLPEAGHPASPAHPLLGCPVPSVPPAAEPVPHLQTPTSEPQTVARACPQSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RSLGQLEFPLPEAGHPASPAHPLLGCPVPSVPPAAEPVPHLQTPTSEPQTVARACPQSAK
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD PPSGSKSGLRTGSSCRHTARSKAARRPSHPKQPRVQRPRPRRRRRRRTNGWVPVGAACEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPSGSKSGLRTGSSCRHTARSKAARRPSHPKQPRVQRPRPRRRRRRRTNGWVPVGAACEK
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD AVYVLDEPEPAIRKSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AVYVLDEPEPAIRKSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGE
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD LMMSLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LMMSLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFC
670 680 690 700 710 720
720 730 740 750 760 770
pF1KSD AMAKRRGEGLPSRKTALVPPSADYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AMAKRRGEGLPSRKTALVPPSADYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNPQ
730 740 750 760 770 780
779 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:52:06 2016 done: Thu Nov 3 18:52:07 2016
Total Scan time: 5.370 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]