FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0948, 521 aa
  1>>>pF1KSDA0948 521 - 521 aa - 521 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6648+/-0.000752; mu= 17.3266+/- 0.046
 mean_var=79.4435+/-15.622, 0's: 0 Z-trim(109.3): 17  B-trim: 0 in 0/53
 Lambda= 0.143895
 statistics sampled from 10756 (10763) to 10756 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.331), width:  16
 Scan time:  3.300

The best scores are:                                      opt bits E(32554)
CCDS5502.1 TBRG4 gene_id:9238|Hs108|chr7           ( 521) 3434 722.4  3e-208
CCDS5501.1 TBRG4 gene_id:9238|Hs108|chr7           ( 631) 1873 398.4 1.3e-110


>>CCDS5502.1 TBRG4 gene_id:9238|Hs108|chr7                (521 aa)
 initn: 3434 init1: 3434 opt: 3434  Z-score: 3852.2  bits: 722.4 E(32554): 3e-208
Smith-Waterman score: 3434; 100.0% identity (100.0% similar) in 521 aa overlap (1-521:1-521)

               10        20        30        40        50        60
pF1KSD MAAHLVKRCTCLLREAARQAPAMAPVGRLRLAWVAHKTLTSSATSPISHLPGSLMEPVEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAAHLVKRCTCLLREAARQAPAMAPVGRLRLAWVAHKTLTSSATSPISHLPGSLMEPVEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ERASTPYIEKQVDHLIKKATRPEELLELLGGSHDLDSNQAAMVLIRLSHLLSEKPEDKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ERASTPYIEKQVDHLIKKATRPEELLELLGGSHDLDSNQAAMVLIRLSHLLSEKPEDKGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LIQDAHFHQLLCLLNSQIASVWHGTLSKLLGSLYALGIPKASKELQSVEQEVRWRMRKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LIQDAHFHQLLCLLNSQIASVWHGTLSKLLGSLYALGIPKASKELQSVEQEVRWRMRKLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YKHLAFLAESCATLSQEQHSQELLAELLTHLERRWTEIEDSHTLVTVMMKVGHLSEPLMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YKHLAFLAESCATLSQEQHSQELLAELLTHLERRWTEIEDSHTLVTVMMKVGHLSEPLMN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RLEDKHVLNRAQDITLPHLCSVLLAFARLNFHPDQEDQFFSLVHEKLGSELPGLEPALQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RLEDKHVLNRAQDITLPHLCSVLLAFARLNFHPDQEDQFFSLVHEKLGSELPGLEPALQV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DLVWALCVLQQAREAELQAVLHPEFHIQFLGGKSQKDQNTFQKLLHINATALLEYPEYSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DLVWALCVLQQAREAELQAVLHPEFHIQFLGGKSQKDQNTFQKLLHINATALLEYPEYSG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PLLPASAVAPGPSALDRKVTPLQKELQETLKGLLGSADKGSLEVATQYGWVLDAEVLLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PLLPASAVAPGPSALDRKVTPLQKELQETLKGLLGSADKGSLEVATQYGWVLDAEVLLDS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DGEFLPVRDFVAPHLAQPTGSQSPPPGSKRLAFLRWEFPNFNSRSKDLLGRFVLARRHIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DGEFLPVRDFVAPHLAQPTGSQSPPPGSKRLAFLRWEFPNFNSRSKDLLGRFVLARRHIV
              430       440       450       460       470       480

              490       500       510       520 
pF1KSD AAGFLIVDVPFYEWLELKSEWQKGAYLKDKMRKAVAEELAK
       :::::::::::::::::::::::::::::::::::::::::
CCDS55 AAGFLIVDVPFYEWLELKSEWQKGAYLKDKMRKAVAEELAK
              490       500       510       520 

>>CCDS5501.1 TBRG4 gene_id:9238|Hs108|chr7                (631 aa)
 initn: 1846 init1: 1846 opt: 1873  Z-score: 2099.6  bits: 398.4 E(32554): 1.3e-110
Smith-Waterman score: 2693; 80.1% identity (80.1% similar) in 553 aa overlap (79-521:79-631)

       50        60        70        80        90       100        
pF1KSD HLPGSLMEPVEKERASTPYIEKQVDHLIKKATRPEELLELLGGSHDLDSNQAAMVLIRLS
                                     ::::::::::::::::::::::::::::::
CCDS55 HLPGSLMEPVEKERASTPYIEKQVDHLIKKATRPEELLELLGGSHDLDSNQAAMVLIRLS
       50        60        70        80        90       100        

      110       120       130       140       150       160        
pF1KSD HLLSEKPEDKGLLIQDAHFHQLLCLLNSQIASVWHGTLSKLLGSLYALGIPKASKELQSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HLLSEKPEDKGLLIQDAHFHQLLCLLNSQIASVWHGTLSKLLGSLYALGIPKASKELQSV
      110       120       130       140       150       160        

      170       180       190       200       210       220        
pF1KSD EQEVRWRMRKLKYKHLAFLAESCATLSQEQHSQELLAELLTHLERRWTEIEDSHTLVTVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EQEVRWRMRKLKYKHLAFLAESCATLSQEQHSQELLAELLTHLERRWTEIEDSHTLVTVM
      170       180       190       200       210       220        

      230       240                                                
pF1KSD MKVGHLSEPLMNRLEDK-------------------------------------------
       :::::::::::::::::                                           
CCDS55 MKVGHLSEPLMNRLEDKCLELVEHFGPNELRKVLVMLAAQSRRSVPLLRAISYHLVQKPF
      230       240       250       260       270       280        

                                                                   
pF1KSD ------------------------------------------------------------
                                                                   
CCDS55 SLTKDVLLDVAYAYGKLSFHQTQVSQRLATDLLSLMPSLTSGEVAHCAKSFALLKWLSLP
      290       300       310       320       330       340        

                250       260       270       280       290        
pF1KSD -------HVLNRAQDITLPHLCSVLLAFARLNFHPDQEDQFFSLVHEKLGSELPGLEPAL
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LFEAFAQHVLNRAQDITLPHLCSVLLAFARLNFHPDQEDQFFSLVHEKLGSELPGLEPAL
      350       360       370       380       390       400        

      300       310       320       330       340       350        
pF1KSD QVDLVWALCVLQQAREAELQAVLHPEFHIQFLGGKSQKDQNTFQKLLHINATALLEYPEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QVDLVWALCVLQQAREAELQAVLHPEFHIQFLGGKSQKDQNTFQKLLHINATALLEYPEY
      410       420       430       440       450       460        

      360       370       380       390       400       410        
pF1KSD SGPLLPASAVAPGPSALDRKVTPLQKELQETLKGLLGSADKGSLEVATQYGWVLDAEVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SGPLLPASAVAPGPSALDRKVTPLQKELQETLKGLLGSADKGSLEVATQYGWVLDAEVLL
      470       480       490       500       510       520        

      420       430       440       450       460       470        
pF1KSD DSDGEFLPVRDFVAPHLAQPTGSQSPPPGSKRLAFLRWEFPNFNSRSKDLLGRFVLARRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DSDGEFLPVRDFVAPHLAQPTGSQSPPPGSKRLAFLRWEFPNFNSRSKDLLGRFVLARRH
      530       540       550       560       570       580        

      480       490       500       510       520 
pF1KSD IVAAGFLIVDVPFYEWLELKSEWQKGAYLKDKMRKAVAEELAK
       :::::::::::::::::::::::::::::::::::::::::::
CCDS55 IVAAGFLIVDVPFYEWLELKSEWQKGAYLKDKMRKAVAEELAK
      590       600       610       620       630 

>--
 initn: 511 init1: 511 opt: 511  Z-score: 571.5  bits: 115.7 E(32554): 1.6e-25
Smith-Waterman score: 511; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KSD MAAHLVKRCTCLLREAARQAPAMAPVGRLRLAWVAHKTLTSSATSPISHLPGSLMEPVEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAAHLVKRCTCLLREAARQAPAMAPVGRLRLAWVAHKTLTSSATSPISHLPGSLMEPVEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ERASTPYIEKQVDHLIKKATRPEELLELLGGSHDLDSNQAAMVLIRLSHLLSEKPEDKGL
       ::::::::::::::::::                                          
CCDS55 ERASTPYIEKQVDHLIKKATRPEELLELLGGSHDLDSNQAAMVLIRLSHLLSEKPEDKGL
               70        80        90       100       110       120




521 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:21:04 2016 done: Thu Nov  3 04:21:05 2016
 Total Scan time:  3.300 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]