Result of FASTA (ccds) for
pF1KSDA0958
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0958, 424 aa
1>>>pF1KSDA0958 424 - 424 aa - 424 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3288+/-0.00083; mu= 17.2517+/- 0.050
mean_var=65.2540+/-13.493, 0's: 0 Z-trim(107.2): 21 B-trim: 383 in 1/48
Lambda= 0.158771
statistics sampled from 9397 (9405) to 9397 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.289), width: 16
Scan time: 2.990
The best scores are: opt bits E(32554)
CCDS13721.1 POFUT2 gene_id:23275|Hs108|chr21 ( 424) 2940 682.2 2.6e-196
CCDS13719.1 POFUT2 gene_id:23275|Hs108|chr21 ( 429) 2624 609.8 1.6e-174
>>CCDS13721.1 POFUT2 gene_id:23275|Hs108|chr21 (424 aa)
initn: 2940 init1: 2940 opt: 2940 Z-score: 3637.9 bits: 682.2 E(32554): 2.6e-196
Smith-Waterman score: 2940; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424)
10 20 30 40 50 60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LYKDGGVAIIDQWICAHARCLPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LYKDGGVAIIDQWICAHARCLPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTV
370 380 390 400 410 420
pF1KSD CLLV
::::
CCDS13 CLLV
>>CCDS13719.1 POFUT2 gene_id:23275|Hs108|chr21 (429 aa)
initn: 2620 init1: 2620 opt: 2624 Z-score: 3246.7 bits: 609.8 E(32554): 1.6e-174
Smith-Waterman score: 2624; 98.2% identity (99.0% similar) in 390 aa overlap (1-389:1-390)
10 20 30 40 50 60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
310 320 330 340 350 360
370 380 390 400 410
pF1KSD LYKDGGVAIIDQWICAHARC-LPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHT
::::::::::::::::::: . ::.:. :
CCDS13 LYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACE
370 380 390 400 410 420
424 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:24:49 2016 done: Thu Nov 3 04:24:50 2016
Total Scan time: 2.990 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]