Result of FASTA (omim) for
pF1KSDA0958
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0958, 424 aa
1>>>pF1KSDA0958 424 - 424 aa - 424 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7516+/-0.000373; mu= 20.8961+/- 0.023
mean_var=69.9391+/-14.259, 0's: 0 Z-trim(114.1): 26 B-trim: 0 in 0/50
Lambda= 0.153361
statistics sampled from 23696 (23719) to 23696 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.278), width: 16
Scan time: 9.050
The best scores are: opt bits E(85289)
NP_056042 (OMIM: 610249) GDP-fucose protein O-fuco ( 424) 2940 659.6 4.1e-189
NP_598368 (OMIM: 610249) GDP-fucose protein O-fuco ( 429) 2624 589.7 4.6e-168
XP_006724044 (OMIM: 610249) PREDICTED: GDP-fucose ( 449) 1749 396.1 9.1e-110
XP_011527807 (OMIM: 610249) PREDICTED: GDP-fucose ( 488) 1413 321.8 2.3e-87
XP_011527812 (OMIM: 610249) PREDICTED: GDP-fucose ( 267) 1404 319.6 5.9e-87
XP_011527808 (OMIM: 610249) PREDICTED: GDP-fucose ( 474) 1404 319.8 9e-87
XP_011527806 (OMIM: 610249) PREDICTED: GDP-fucose ( 494) 1404 319.9 9.3e-87
XP_016883795 (OMIM: 610249) PREDICTED: GDP-fucose ( 419) 1253 286.4 9.4e-77
XP_011527809 (OMIM: 610249) PREDICTED: GDP-fucose ( 439) 1253 286.4 9.7e-77
XP_016883798 (OMIM: 610249) PREDICTED: GDP-fucose ( 214) 1137 260.4 3.1e-69
XP_011527815 (OMIM: 610249) PREDICTED: GDP-fucose ( 212) 879 203.4 4.6e-52
XP_016883797 (OMIM: 610249) PREDICTED: GDP-fucose ( 225) 879 203.4 4.8e-52
XP_011527813 (OMIM: 610249) PREDICTED: GDP-fucose ( 251) 879 203.4 5.3e-52
XP_011527814 (OMIM: 610249) PREDICTED: GDP-fucose ( 251) 879 203.4 5.3e-52
XP_016883796 (OMIM: 610249) PREDICTED: GDP-fucose ( 280) 879 203.5 5.7e-52
XP_011527811 (OMIM: 610249) PREDICTED: GDP-fucose ( 301) 879 203.5 6e-52
XP_011527810 (OMIM: 610249) PREDICTED: GDP-fucose ( 344) 879 203.6 6.6e-52
>>NP_056042 (OMIM: 610249) GDP-fucose protein O-fucosylt (424 aa)
initn: 2940 init1: 2940 opt: 2940 Z-score: 3516.1 bits: 659.6 E(85289): 4.1e-189
Smith-Waterman score: 2940; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424)
10 20 30 40 50 60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LYKDGGVAIIDQWICAHARCLPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LYKDGGVAIIDQWICAHARCLPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTV
370 380 390 400 410 420
pF1KSD CLLV
::::
NP_056 CLLV
>>NP_598368 (OMIM: 610249) GDP-fucose protein O-fucosylt (429 aa)
initn: 2620 init1: 2620 opt: 2624 Z-score: 3138.2 bits: 589.7 E(85289): 4.6e-168
Smith-Waterman score: 2624; 98.2% identity (99.0% similar) in 390 aa overlap (1-389:1-390)
10 20 30 40 50 60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
310 320 330 340 350 360
370 380 390 400 410
pF1KSD LYKDGGVAIIDQWICAHARC-LPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHT
::::::::::::::::::: . ::.:. :
NP_598 LYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACE
370 380 390 400 410 420
>>XP_006724044 (OMIM: 610249) PREDICTED: GDP-fucose prot (449 aa)
initn: 2606 init1: 1745 opt: 1749 Z-score: 2091.7 bits: 396.1 E(85289): 9.1e-110
Smith-Waterman score: 2574; 93.4% identity (94.1% similar) in 410 aa overlap (1-389:1-410)
10 20 30 40 50 60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
70 80 90 100 110 120
130 140 150 160
pF1KSD EYEQFIA--------------------ESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERP
::::::: :::::::::::::::::::::::::::::::::
XP_006 EYEQFIAGRRTACGVCFVVSQCSARDKESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERP
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD CIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD ENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKL
250 260 270 280 290 300
290 300 310 320 330 340
pF1KSD GSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYE
310 320 330 340 350 360
350 360 370 380 390
pF1KSD ELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWICAHARC-LPTSLSAESGSGGFQRFFC
::::::::::::::::::::::::::::::::::::::: . ::.:. :
XP_006 ELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREIL
370 380 390 400 410 420
400 410 420
pF1KSD PKYSVSEQMVACVHSGHFHTVCLLV
XP_006 GLDPKTTYNRFCGDQEKACEQPTHWKITY
430 440
>>XP_011527807 (OMIM: 610249) PREDICTED: GDP-fucose prot (488 aa)
initn: 2274 init1: 1413 opt: 1413 Z-score: 1689.4 bits: 321.8 E(85289): 2.3e-87
Smith-Waterman score: 2258; 84.2% identity (84.2% similar) in 412 aa overlap (34-380:34-445)
10 20 30 40 50 60
pF1KSD LSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRRDVY
::::::::::::::::::::::::::::::
XP_011 LSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRRDVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEYE
70 80 90 100 110 120
130 140 150 160
pF1KSD QFIA--------------------ESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCID
:::: ::::::::::::::::::::::::::::::::::::
XP_011 QFIAGRRTACGVCFVVSQCSARDKESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCID
130 140 150 160 170 180
170
pF1KSD QLLYSQDKHEYYR---------------------------------------------GW
::::::::::::: ::
XP_011 QLLYSQDKHEYYRDGGLVSPKCRLPLKALTLPGLLWKSCQLTASMCPVPGQLALKHGRGW
190 200 210 220 230 240
180 190 200 210 220 230
pF1KSD FWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRR
250 260 270 280 290 300
240 250 260 270 280 290
pF1KSD SMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDF
310 320 330 340 350 360
300 310 320 330 340 350
pF1KSD IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEE
370 380 390 400 410 420
360 370 380 390 400 410
pF1KSD LELYKDGGVAIIDQWICAHARCLPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFH
::::::::::::::::::::::
XP_011 LELYKDGGVAIIDQWICAHARCGLGILTATLAVLSPQPRKPAVGRLRTELSASCPQLREA
430 440 450 460 470 480
>--
initn: 225 init1: 225 opt: 225 Z-score: 268.9 bits: 59.0 E(85289): 3.1e-08
Smith-Waterman score: 225; 100.0% identity (100.0% similar) in 33 aa overlap (1-33:1-33)
10 20 30 40 50 60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
:::::::::::::::::::::::::::::::::
XP_011 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
XP_011 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
70 80 90 100 110 120
>>XP_011527812 (OMIM: 610249) PREDICTED: GDP-fucose prot (267 aa)
initn: 1400 init1: 1400 opt: 1404 Z-score: 1682.1 bits: 319.6 E(85289): 5.9e-87
Smith-Waterman score: 1404; 96.7% identity (98.1% similar) in 215 aa overlap (176-389:14-228)
150 160 170 180 190 200
pF1KSD GWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPL
::::::::::::::::::::::::::::::
XP_011 MCPVPGQLALKHGRGWFWGYEETRGLNVSCLSVQGSASIVAPL
10 20 30 40
210 220 230 240 250 260
pF1KSD LLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDAD
50 60 70 80 90 100
270 280 290 300 310 320
pF1KSD RIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRL
110 120 130 140 150 160
330 340 350 360 370 380
pF1KSD DKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWICAHARC-LPTS
:::::::::::::::::::::::::::::::::::::::::::::::::::::: . ::
XP_011 DKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWICAHARFFIGTS
170 180 190 200 210 220
390 400 410 420
pF1KSD LSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTVCLLV
.:. :
XP_011 VSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACEQPTHWKITY
230 240 250 260
>>XP_011527808 (OMIM: 610249) PREDICTED: GDP-fucose prot (474 aa)
initn: 1400 init1: 1400 opt: 1404 Z-score: 1678.8 bits: 319.8 E(85289): 9e-87
Smith-Waterman score: 2448; 87.7% identity (88.4% similar) in 422 aa overlap (14-389:14-435)
10 20 30 40 50 60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
70 80 90 100 110 120
130 140 150 160 170
pF1KSD EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYR----
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRDGGL
130 140 150 160 170 180
180 190
pF1KSD -----------------------------------------GWFWGYEETRGLNVSCLSV
:::::::::::::::::::
XP_011 VSPKCRLPLKALTLPGLLWKSCQLTASMCPVPGQLALKHGRGWFWGYEETRGLNVSCLSV
190 200 210 220 230 240
200 210 220 230 240 250
pF1KSD QGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRS
250 260 270 280 290 300
260 270 280 290 300 310
pF1KSD RHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRK
310 320 330 340 350 360
320 330 340 350 360 370
pF1KSD IRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWIC
370 380 390 400 410 420
380 390 400 410 420
pF1KSD AHARC-LPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTVCLLV
:::: . ::.:. :
XP_011 AHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACEQPTHWKITY
430 440 450 460 470
>>XP_011527806 (OMIM: 610249) PREDICTED: GDP-fucose prot (494 aa)
initn: 2261 init1: 1400 opt: 1404 Z-score: 1678.6 bits: 319.9 E(85289): 9.3e-87
Smith-Waterman score: 2249; 82.9% identity (83.6% similar) in 422 aa overlap (34-389:34-455)
10 20 30 40 50 60
pF1KSD LSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRRDVY
::::::::::::::::::::::::::::::
XP_011 LSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRRDVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEYE
70 80 90 100 110 120
130 140 150 160
pF1KSD QFIA--------------------ESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCID
:::: ::::::::::::::::::::::::::::::::::::
XP_011 QFIAGRRTACGVCFVVSQCSARDKESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCID
130 140 150 160 170 180
170
pF1KSD QLLYSQDKHEYYR---------------------------------------------GW
::::::::::::: ::
XP_011 QLLYSQDKHEYYRDGGLVSPKCRLPLKALTLPGLLWKSCQLTASMCPVPGQLALKHGRGW
190 200 210 220 230 240
180 190 200 210 220 230
pF1KSD FWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRR
250 260 270 280 290 300
240 250 260 270 280 290
pF1KSD SMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDF
310 320 330 340 350 360
300 310 320 330 340 350
pF1KSD IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEE
370 380 390 400 410 420
360 370 380 390 400 410
pF1KSD LELYKDGGVAIIDQWICAHARC-LPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHF
::::::::::::::::::::: . ::.:. :
XP_011 LELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKA
430 440 450 460 470 480
420
pF1KSD HTVCLLV
XP_011 CEQPTHWKITY
490
>--
initn: 225 init1: 225 opt: 225 Z-score: 268.8 bits: 59.0 E(85289): 3.1e-08
Smith-Waterman score: 225; 100.0% identity (100.0% similar) in 33 aa overlap (1-33:1-33)
10 20 30 40 50 60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
:::::::::::::::::::::::::::::::::
XP_011 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
XP_011 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
70 80 90 100 110 120
>>XP_016883795 (OMIM: 610249) PREDICTED: GDP-fucose prot (419 aa)
initn: 2462 init1: 1249 opt: 1253 Z-score: 1499.0 bits: 286.4 E(85289): 9.4e-77
Smith-Waterman score: 2442; 93.8% identity (95.1% similar) in 390 aa overlap (1-389:1-380)
10 20 30 40 50 60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
XP_016 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRCLL-
130 140 150 160 170
190 200 210 220 230 240
pF1KSD GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
: : . :::::::::::::::::::::::::::::::::::::::::::::
XP_016 -----RLLPLP----QGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
300 310 320 330 340 350
370 380 390 400 410
pF1KSD LYKDGGVAIIDQWICAHARC-LPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHT
::::::::::::::::::: . ::.:. :
XP_016 LYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACE
360 370 380 390 400 410
>>XP_011527809 (OMIM: 610249) PREDICTED: GDP-fucose prot (439 aa)
initn: 2448 init1: 1249 opt: 1253 Z-score: 1498.7 bits: 286.4 E(85289): 9.7e-77
Smith-Waterman score: 2392; 89.3% identity (90.5% similar) in 410 aa overlap (1-389:1-400)
10 20 30 40 50 60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
70 80 90 100 110 120
130 140 150 160
pF1KSD EYEQFIA--------------------ESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERP
::::::: :::::::::::::::::::::::::::::::::
XP_011 EYEQFIAGRRTACGVCFVVSQCSARDKESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERP
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD CIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRA
:::::::::::::::: . : : . :::::::::::::::::::::::::
XP_011 CIDQLLYSQDKHEYYRCLL------RLLPLP----QGSASIVAPLLLRNTSARSVMLDRA
190 200 210 220 230
230 240 250 260 270 280
pF1KSD ENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKL
240 250 260 270 280 290
290 300 310 320 330 340
pF1KSD GSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYE
300 310 320 330 340 350
350 360 370 380 390
pF1KSD ELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWICAHARC-LPTSLSAESGSGGFQRFFC
::::::::::::::::::::::::::::::::::::::: . ::.:. :
XP_011 ELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREIL
360 370 380 390 400 410
400 410 420
pF1KSD PKYSVSEQMVACVHSGHFHTVCLLV
XP_011 GLDPKTTYNRFCGDQEKACEQPTHWKITY
420 430
>>XP_016883798 (OMIM: 610249) PREDICTED: GDP-fucose prot (214 aa)
initn: 1133 init1: 1133 opt: 1137 Z-score: 1364.1 bits: 260.4 E(85289): 3.1e-69
Smith-Waterman score: 1137; 96.0% identity (97.7% similar) in 175 aa overlap (216-389:1-175)
190 200 210 220 230 240
pF1KSD RGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARH
::::::::::::::::::::::::::::::
XP_016 MLDRAENLLHDHYGGKEYWDTRRSMVFARH
10 20 30
250 260 270 280 290 300
pF1KSD LREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQD
40 50 60 70 80 90
310 320 330 340 350 360
pF1KSD VPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG
100 110 120 130 140 150
370 380 390 400 410 420
pF1KSD GVAIIDQWICAHARC-LPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTVCLLV
:::::::::::::: . ::.:. :
XP_016 GVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACEQPTHW
160 170 180 190 200 210
424 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:24:50 2016 done: Thu Nov 3 04:24:51 2016
Total Scan time: 9.050 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]