Result of FASTA (ccds) for
pF1KSDA0975
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0975, 1504 aa
1>>>pF1KSDA0975 1504 - 1504 aa - 1504 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.5182+/-0.00122; mu= -3.3658+/- 0.074
mean_var=365.3297+/-74.290, 0's: 0 Z-trim(112.1): 32 B-trim: 0 in 0/54
Lambda= 0.067101
statistics sampled from 12867 (12887) to 12867 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.396), width: 16
Scan time: 6.460
The best scores are: opt bits E(32554)
CCDS33767.1 NISCH gene_id:11188|Hs108|chr3 (1504) 9993 982.8 0
CCDS63651.1 NISCH gene_id:11188|Hs108|chr3 ( 515) 3292 333.8 8.4e-91
CCDS63652.1 NISCH gene_id:11188|Hs108|chr3 ( 583) 3284 333.1 1.6e-90
>>CCDS33767.1 NISCH gene_id:11188|Hs108|chr3 (1504 aa)
initn: 9993 init1: 9993 opt: 9993 Z-score: 5243.1 bits: 982.8 E(32554): 0
Smith-Waterman score: 9993; 99.8% identity (99.9% similar) in 1504 aa overlap (1-1504:1-1504)
10 20 30 40 50 60
pF1KSD MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS33 TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD AAPCIRPSSSPPTVAPASASLPQPILSNQGIMFVQEEALASSLSSTDSLTPEHQPIAQGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AAPCIRPSSSPPTVAPASASLPQPILSNQGIMFVQEEALASSLSSTDSLTPEHQPIAQGC
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SDSLESIPAGQAASDDLRDVPGAVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SDSLESIPAGQAASDDLRDVPGAVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD DFIQRLSTLIRQAIERQLPAWIEAANQREEGQGEQGEEEDEEEEEEEDVAENRYFEMGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DFIQRLSTLIRQAIERQLPAWIEAANQREEGQGEQGEEEDEEEEEEEDVAENRYFEMGPP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD DVEEEEGGGQGEEEEEEEEDEEAEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DVEEEEGGGQGEEEEEEEEDEEAEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD SIRQFAACLVLTDFGIAVFEIPHQESRGSSQHILSSLRFVFCFPHGDLTEFGFLMPELCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SIRQFAACLVLTDFGIAVFEIPHQESRGSSQHILSSLRFVFCFPHGDLTEFGFLMPELCL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD VLKVRHSENTLFIISDAANLHEFHADLRSCFAPQHMAMLCSPILYGSHTSLQEFLRQLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VLKVRHSENTLFIISDAANLHEFHADLRSCFAPQHMAMLCSPILYGSHTSLQEFLRQLLT
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD FYKVAGGCQERSQGCFPVYLVYSDKRMVQTAAGDYSGNIEWASCTLCSAVRRSCCAPSEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FYKVAGGCQERSQGCFPVYLVYSDKRMVQTAAGDYSGNIEWASCTLCSAVRRSCCAPSEA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD VKSAAIPYWLLLTPQHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPTRSCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VKSAAIPYWLLLTPQHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPTRSCT
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD QPRGAFADGHVLELLVGYRFVTAIFVLPHEKFHFLRVYNQLRASLQDLKTVVIAKTPGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QPRGAFADGHVLELLVGYRFVTAIFVLPHEKFHFLRVYNQLRASLQDLKTVVIAKTPGTG
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD GSAQGSFADGQPAERRASNDQRPQEVPAEALAPAPVEVPAPAPAAASASGPAKTPAPAEA
:: ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS33 GSPQGSFADGQPAERRASNDQRPQEVPAEALAPAPAEVPAPAPAAASASGPAKTPAPAEA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD STSALVPEETPVEAPAPPPAEAPAQYPSEHLIQATSEENQIPSHLPACPSLRHVASLRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 STSALVPEETPVEAPAPPPAEAPAQYPSEHLIQATSEENQIPSHLPACPSLRHVASLRGS
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD AIIELFHSSIAEVENEELRHLMWSSVVFYQTPGLEVTACVLLSTKAVYFVLHDGLRRYFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AIIELFHSSIAEVENEELRHLMWSSVVFYQTPGLEVTACVLLSTKAVYFVLHDGLRRYFS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD EPLQDFWHQKNTDYNNSPFHISQCFVLKLSDLQSVNVGLFDQHFRLTGSTPMQVVTCLTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EPLQDFWHQKNTDYNNSPFHISQCFVLKLSDLQSVNVGLFDQHFRLTGSTPMQVVTCLTR
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD DSYLTHCFLQHLMVVLSSLERTPSPEPVDKDFYSEFGNKTTGKMENYELIHSSRVKFTYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DSYLTHCFLQHLMVVLSSLERTPSPEPVDKDFYSEFGNKTTGKMENYELIHSSRVKFTYP
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KSD SEEEIGDLTFTVAQKMAEPEKAPALSILLYVQAFQVGMPPPGCCRGPLRPKTLLLTSSEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEEEIGDLTFTVAQKMAEPEKAPALSILLYVQAFQVGMPPPGCCRGPLRPKTLLLTSSEI
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KSD FLLDEDCVHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYQTYPQALTLVFDDVQGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FLLDEDCVHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYQTYPQALTLVFDDVQGH
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KSD DLMGSVTLDHFGEVPGGPARASQGREVQWQVFVPSAESREKLISLLARQWEALCGRELPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLMGSVTLDHFGEVPGGPARASQGREVQWQVFVPSAESREKLISLLARQWEALCGRELPV
1450 1460 1470 1480 1490 1500
pF1KSD ELTG
::::
CCDS33 ELTG
>>CCDS63651.1 NISCH gene_id:11188|Hs108|chr3 (515 aa)
initn: 3390 init1: 3292 opt: 3292 Z-score: 1743.7 bits: 333.8 E(32554): 8.4e-91
Smith-Waterman score: 3292; 99.6% identity (100.0% similar) in 512 aa overlap (1-512:1-512)
10 20 30 40 50 60
pF1KSD MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS63 TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD AAPCIRPSSSPPTVAPASASLPQPILSNQGIMFVQEEALASSLSSTDSLTPEHQPIAQGC
:::::::::::::::::::::::::::::::.
CCDS63 AAPCIRPSSSPPTVAPASASLPQPILSNQGILGDE
490 500 510
550 560 570 580 590 600
pF1KSD SDSLESIPAGQAASDDLRDVPGAVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQ
>>CCDS63652.1 NISCH gene_id:11188|Hs108|chr3 (583 aa)
initn: 3284 init1: 3284 opt: 3284 Z-score: 1738.8 bits: 333.1 E(32554): 1.6e-90
Smith-Waterman score: 3284; 99.8% identity (100.0% similar) in 510 aa overlap (1-510:1-510)
10 20 30 40 50 60
pF1KSD MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS63 TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD AAPCIRPSSSPPTVAPASASLPQPILSNQGIMFVQEEALASSLSSTDSLTPEHQPIAQGC
::::::::::::::::::::::::::::::
CCDS63 AAPCIRPSSSPPTVAPASASLPQPILSNQGNRVCILLLVEPHSPAWAPWLGWGWGRGAST
490 500 510 520 530 540
1504 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:54:21 2016 done: Thu Nov 3 18:54:23 2016
Total Scan time: 6.460 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]